FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5142, 431 aa
  1>>>pF1KB5142 431 - 431 aa - 431 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2048+/-0.000783; mu= 6.5979+/- 0.048
 mean_var=175.2715+/-35.187, 0's: 0 Z-trim(114.5): 15  B-trim: 0 in 0/53
 Lambda= 0.096877
 statistics sampled from 15027 (15039) to 15027 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.462), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(32554)
CCDS9980.1 EIF5 gene_id:1983|Hs108|chr14           ( 431) 2868 412.4 4.3e-115


>>CCDS9980.1 EIF5 gene_id:1983|Hs108|chr14                (431 aa)
 initn: 2868 init1: 2868 opt: 2868  Z-score: 2179.8  bits: 412.4 E(32554): 4.3e-115
Smith-Waterman score: 2868; 100.0% identity (100.0% similar) in 431 aa overlap (1-431:1-431)

               10        20        30        40        50        60
pF1KB5 MSVNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MSVNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SCKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSETPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 SCKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSETPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRRMDEISDHAKVLTLSDDLERTIEERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRRMDEISDHAKVLTLSDDLERTIEERV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 NILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 NILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 KYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIEVVYSKAASVPKVETVKSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIEVVYSKAASVPKVETVKSD
              370       380       390       400       410       420

              430 
pF1KB5 NKDDDIDIDAI
       :::::::::::
CCDS99 NKDDDIDIDAI
              430 




431 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:21:19 2016 done: Sat Nov  5 06:21:19 2016
 Total Scan time:  3.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]