Result of FASTA (omim) for
pF1KB5134
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5134, 796 aa
1>>>pF1KB5134 796 - 796 aa - 796 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5939+/-0.000446; mu= 19.3252+/- 0.028
mean_var=80.9727+/-16.264, 0's: 0 Z-trim(111.5): 412 B-trim: 102 in 1/52
Lambda= 0.142530
statistics sampled from 19693 (20121) to 19693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.236), width: 16
Scan time: 12.010
The best scores are: opt bits E(85289)
NP_001788 (OMIM: 600023) cadherin-11 isoform 1 pre ( 796) 5314 1103.2 0
XP_011521105 (OMIM: 600023) PREDICTED: cadherin-11 ( 796) 5314 1103.2 0
XP_005255820 (OMIM: 600023) PREDICTED: cadherin-11 ( 796) 5314 1103.2 0
XP_005255819 (OMIM: 600023) PREDICTED: cadherin-11 ( 796) 5314 1103.2 0
XP_005255818 (OMIM: 600023) PREDICTED: cadherin-11 ( 796) 5314 1103.2 0
NP_001317505 (OMIM: 600023) cadherin-11 isoform 3 ( 670) 4436 922.6 0
NP_001295321 (OMIM: 600023) cadherin-11 isoform 2 ( 693) 4203 874.7 0
NP_001787 (OMIM: 603008) cadherin-8 preproprotein ( 799) 3582 747.1 6.9e-215
XP_016864418 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
XP_016864419 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
XP_016864413 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
XP_006714498 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
XP_005248285 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
XP_016864415 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
XP_016864420 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
XP_016864414 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
XP_016864421 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
NP_004925 (OMIM: 603019) cadherin-18 isoform 1 pre ( 790) 3100 648.0 4.7e-185
NP_001278885 (OMIM: 603019) cadherin-18 isoform 1 ( 790) 3100 648.0 4.7e-185
XP_016864416 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
XP_016864417 (OMIM: 603019) PREDICTED: cadherin-18 ( 790) 3100 648.0 4.7e-185
NP_006718 (OMIM: 604555) cadherin-10 isoform 1 pre ( 788) 3091 646.1 1.7e-184
XP_011512225 (OMIM: 604555) PREDICTED: cadherin-10 ( 788) 3091 646.1 1.7e-184
XP_011512223 (OMIM: 603007) PREDICTED: cadherin-6 ( 790) 3085 644.9 4e-184
NP_004923 (OMIM: 603007) cadherin-6 preproprotein ( 790) 3085 644.9 4e-184
XP_016864399 (OMIM: 603007) PREDICTED: cadherin-6 ( 790) 3085 644.9 4e-184
XP_016881012 (OMIM: 605806) PREDICTED: cadherin-7 ( 785) 3074 642.6 1.9e-183
NP_004352 (OMIM: 605806) cadherin-7 isoform 1 prep ( 785) 3074 642.6 1.9e-183
NP_387450 (OMIM: 605806) cadherin-7 isoform 1 prep ( 785) 3074 642.6 1.9e-183
XP_005255817 (OMIM: 603008) PREDICTED: cadherin-8 ( 711) 3052 638.1 4e-182
NP_057363 (OMIM: 609974) cadherin-9 preproprotein ( 789) 3026 632.8 1.8e-180
XP_011512229 (OMIM: 600562) PREDICTED: cadherin-12 ( 794) 2987 624.7 4.6e-178
XP_016864409 (OMIM: 600562) PREDICTED: cadherin-12 ( 794) 2987 624.7 4.6e-178
NP_001304156 (OMIM: 600562) cadherin-12 isoform 1 ( 794) 2987 624.7 4.6e-178
XP_016864410 (OMIM: 600562) PREDICTED: cadherin-12 ( 794) 2987 624.7 4.6e-178
NP_004052 (OMIM: 600562) cadherin-12 isoform 1 pre ( 794) 2987 624.7 4.6e-178
NP_114097 (OMIM: 605807) cadherin-20 preproprotein ( 801) 2984 624.1 7.2e-178
XP_016878318 (OMIM: 603008) PREDICTED: cadherin-8 ( 621) 2931 613.2 1.1e-174
XP_011512230 (OMIM: 603019) PREDICTED: cadherin-18 ( 724) 2914 609.7 1.4e-173
NP_001304153 (OMIM: 604555) cadherin-10 isoform 3 ( 786) 2525 529.7 1.8e-149
XP_016864404 (OMIM: 604555) PREDICTED: cadherin-10 ( 786) 2525 529.7 1.8e-149
XP_011512231 (OMIM: 603019) PREDICTED: cadherin-18 ( 622) 2467 517.7 5.9e-146
NP_001304143 (OMIM: 605806) cadherin-7 isoform 2 p ( 630) 2420 508.1 4.8e-143
NP_067071 (OMIM: 609920) cadherin-22 precursor [Ho ( 828) 2416 507.3 1.1e-142
XP_011527296 (OMIM: 609920) PREDICTED: cadherin-22 ( 828) 2416 507.3 1.1e-142
XP_016864400 (OMIM: 603007) PREDICTED: cadherin-6 ( 663) 2413 506.7 1.4e-142
XP_016864423 (OMIM: 603019) PREDICTED: cadherin-18 ( 567) 2204 463.6 1e-129
XP_016864422 (OMIM: 603019) PREDICTED: cadherin-18 ( 567) 2204 463.6 1e-129
NP_001304157 (OMIM: 600562) cadherin-12 isoform 2 ( 754) 2198 462.5 3.1e-129
NP_001161139 (OMIM: 603019) cadherin-18 isoform 2 ( 574) 2097 441.6 4.4e-123
>>NP_001788 (OMIM: 600023) cadherin-11 isoform 1 preprop (796 aa)
initn: 5314 init1: 5314 opt: 5314 Z-score: 5903.7 bits: 1103.2 E(85289): 0
Smith-Waterman score: 5314; 99.9% identity (100.0% similar) in 796 aa overlap (1-796:1-796)
10 20 30 40 50 60
pF1KB5 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 NGPFKDTVTVKIAVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
730 740 750 760 770 780
790
pF1KB5 KLADLYGSKDTFDDDS
::::::::::::::::
NP_001 KLADLYGSKDTFDDDS
790
>>XP_011521105 (OMIM: 600023) PREDICTED: cadherin-11 iso (796 aa)
initn: 5314 init1: 5314 opt: 5314 Z-score: 5903.7 bits: 1103.2 E(85289): 0
Smith-Waterman score: 5314; 99.9% identity (100.0% similar) in 796 aa overlap (1-796:1-796)
10 20 30 40 50 60
pF1KB5 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 NGPFKDTVTVKIAVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
730 740 750 760 770 780
790
pF1KB5 KLADLYGSKDTFDDDS
::::::::::::::::
XP_011 KLADLYGSKDTFDDDS
790
>>XP_005255820 (OMIM: 600023) PREDICTED: cadherin-11 iso (796 aa)
initn: 5314 init1: 5314 opt: 5314 Z-score: 5903.7 bits: 1103.2 E(85289): 0
Smith-Waterman score: 5314; 99.9% identity (100.0% similar) in 796 aa overlap (1-796:1-796)
10 20 30 40 50 60
pF1KB5 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 NGPFKDTVTVKIAVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
730 740 750 760 770 780
790
pF1KB5 KLADLYGSKDTFDDDS
::::::::::::::::
XP_005 KLADLYGSKDTFDDDS
790
>>XP_005255819 (OMIM: 600023) PREDICTED: cadherin-11 iso (796 aa)
initn: 5314 init1: 5314 opt: 5314 Z-score: 5903.7 bits: 1103.2 E(85289): 0
Smith-Waterman score: 5314; 99.9% identity (100.0% similar) in 796 aa overlap (1-796:1-796)
10 20 30 40 50 60
pF1KB5 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 NGPFKDTVTVKIAVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
730 740 750 760 770 780
790
pF1KB5 KLADLYGSKDTFDDDS
::::::::::::::::
XP_005 KLADLYGSKDTFDDDS
790
>>XP_005255818 (OMIM: 600023) PREDICTED: cadherin-11 iso (796 aa)
initn: 5314 init1: 5314 opt: 5314 Z-score: 5903.7 bits: 1103.2 E(85289): 0
Smith-Waterman score: 5314; 99.9% identity (100.0% similar) in 796 aa overlap (1-796:1-796)
10 20 30 40 50 60
pF1KB5 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 NGPFKDTVTVKIAVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 INTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFK
730 740 750 760 770 780
790
pF1KB5 KLADLYGSKDTFDDDS
::::::::::::::::
XP_005 KLADLYGSKDTFDDDS
790
>>NP_001317505 (OMIM: 600023) cadherin-11 isoform 3 [Hom (670 aa)
initn: 4436 init1: 4436 opt: 4436 Z-score: 4929.1 bits: 922.6 E(85289): 0
Smith-Waterman score: 4436; 99.9% identity (100.0% similar) in 670 aa overlap (127-796:1-670)
100 110 120 130 140 150
pF1KB5 AGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNP
::::::::::::::::::::::::::::::
NP_001 MAQAVDRDTNRPLEPPSEFIVKVQDINDNP
10 20 30
160 170 180 190 200 210
pF1KB5 PEFLHETYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEFLHETYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGI
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB5 IRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMS
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB5 VSEAAVPGEEVGRVKAKDPDIGENGLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSEAAVPGEEVGRVKAKDPDIGENGLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVD
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB5 FETKRAYSLKVEAANVHIDPKFISNGPFKDTVTVKIAVEDADEPPMFLAPSYIHEVQENA
::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
NP_001 FETKRAYSLKVEAANVHIDPKFISNGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENA
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB5 AAGTVVGRVHAKDPDAANSPIRYSIDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAGTVVGRVHAKDPDAANSPIRYSIDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNI
280 290 300 310 320 330
460 470 480 490 500 510
pF1KB5 TVFAAEIHNRHQEAKVPVAIRVLDVNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVFAAEIHNRHQEAKVPVAIRVLDVNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISAD
340 350 360 370 380 390
520 530 540 550 560 570
pF1KB5 DKDDTANGPRFIFSLPPEIIHNPNFTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDDTANGPRFIFSLPPEIIHNPNFTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISD
400 410 420 430 440 450
580 590 600 610 620 630
pF1KB5 GGIPPMSSTNTLTIKVCGCDVNGALLSCNAEAYILNAGLSTGALIAILACIVILLVIVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGIPPMSSTNTLTIKVCGCDVNGALLSCNAEAYILNAGLSTGALIAILACIVILLVIVVL
460 470 480 490 500 510
640 650 660 670 680 690
pF1KB5 FVTLRRQKKEPLIVFEEEDVRENIITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVTLRRQKKEPLIVFEEEDVRENIITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDI
520 530 540 550 560 570
700 710 720 730 740 750
pF1KB5 KPEYQYMPRPGLRPAPNSVDVDDFINTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPEYQYMPRPGLRPAPNSVDVDDFINTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLS
580 590 600 610 620 630
760 770 780 790
pF1KB5 SLESATTDSDLDYDYLQNWGPRFKKLADLYGSKDTFDDDS
::::::::::::::::::::::::::::::::::::::::
NP_001 SLESATTDSDLDYDYLQNWGPRFKKLADLYGSKDTFDDDS
640 650 660 670
>>NP_001295321 (OMIM: 600023) cadherin-11 isoform 2 prec (693 aa)
initn: 4203 init1: 4203 opt: 4203 Z-score: 4669.9 bits: 874.7 E(85289): 0
Smith-Waterman score: 4203; 99.8% identity (100.0% similar) in 631 aa overlap (1-631:1-631)
10 20 30 40 50 60
pF1KB5 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGEN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFIS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 NGPFKDTVTVKIAVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENI
:::::::::::::::::::::::::::::::
NP_001 LLSCNAEAYILNAGLSTGALIAILACIVILLGCPSLMEPPSPREDMRLLYLGFQLMLFSY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 ITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDF
NP_001 VKVNRRFCLLGVFIKLPFLYVVATESPTTLTSL
670 680 690
>>NP_001787 (OMIM: 603008) cadherin-8 preproprotein [Hom (799 aa)
initn: 3581 init1: 2175 opt: 3582 Z-score: 3978.9 bits: 747.1 E(85289): 6.9e-215
Smith-Waterman score: 3582; 69.4% identity (89.2% similar) in 751 aa overlap (42-790:50-796)
20 30 40 50 60 70
pF1KB5 VCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWNQFFVIEEYTGPDP
:.: ..:.::::::::::.::.::..::.:
NP_001 WITLPPCIYMAPMNQSQVLMSGSPLELNSLGEEQRILNRSKRGWVWNQMFVLEEFSGPEP
20 30 40 50 60 70
80 90 100 110 120 130
pF1KB5 VLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAV
.::::::.:.: :. .:::::::.:::::: :.: .:.::: : :::::.:.::: ::::
NP_001 ILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAV
80 90 100 110 120 130
140 150 160 170 180 190
pF1KB5 DRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQVTASDADDPTY
: .:..:::::::::.:::::::: ::::. :::.::: : .:::: .:::.:::::.:
NP_001 DWETSKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVY
140 150 160 170 180 190
200 210 220 230 240 250
pF1KB5 GNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGT
::::::::::::::::::.: .:.::.:::::::::::::: ::::::::::: ::::::
NP_001 GNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGT
200 210 220 230 240 250
260 270 280 290 300 310
pF1KB5 TKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGENGLVTYNIVDGD
: .:.:::::::::::: ::.:..:: : .: : .:::::.: :::::. .:.:.:::
NP_001 TTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGD
260 270 280 290 300 310
320 330 340 350 360 370
pF1KB5 GMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKFISNGPFKDTVTVK
: ::::.: ..:.:.:.:.::.:::::..:.::::::::::::.: . ::::::.:::
NP_001 GTALFEITSDAQAQDGIIRLRKPLDFETKKSYTLKVEAANVHIDPRFSGRGPFKDTATVK
320 330 340 350 360 370
380 390 400 410 420 430
pF1KB5 IAVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYSIDRHTDLDRFF
:.::::::::.: .:.:. ::.:::: ..:.:.: :.::: ..::::.::::::::.: :
NP_001 IVVEDADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQF
380 390 400 410 420 430
440 450 460 470 480 490
pF1KB5 TINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRVLDVNDNAPKFAAP
.:: .:: : . ::::: ..: :::..:.::.:. : ..:::::.:::::::::.::.
NP_001 NINADDGKITLATPLDRELSVWHNITIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASE
440 450 460 470 480 490
500 510 520 530 540 550
pF1KB5 YEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPNFTVRDNRDNTA
::.:.::. :: .: : :.:: :::: :: :..:: ::...:::::.. :.::.
NP_001 YEAFLCENG--KP--GQVIQTVSAMDKDDPKNGHYFLYSLLPEMVNNPNFTIKKNEDNSL
500 510 520 530 540 550
560 570 580 590 600 610
pF1KB5 GVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGALLSCNAEAYIL
.. :...::.::::..:::::.:::.: ::.:::.::::.::::. .:.. :::.:::.:
NP_001 SILAKHNGFNRQKQEVYLLPIIISDSGNPPLSSTSTLTIRVCGCSNDGVVQSCNVEAYVL
560 570 580 590 600 610
620 630 640 650 660 670
pF1KB5 NAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENIITYDDEGGGEE
::: ::::::::::..:::::::::::::.:.::::. ..:::::::: :::::::::
NP_001 PIGLSMGALIAILACIILLLVIVVLFVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEE
620 630 640 650 660 670
680 690 700 710 720 730
pF1KB5 DTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDFINTRIQEADND
:::::::::::::::::::.:::::::. :.::: :: :.::.::::.:::.:..:::::
NP_001 DTEAFDIATLQNPDGINGFLPRKDIKPDLQFMPRQGLAPVPNGVDVDEFINVRLHEADND
680 690 700 710 720 730
740 750 760 770 780
pF1KB5 PTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFKKLADLY--GSK
:::::::::::::::::::::::::::::.:.::: ..:::..::::::.:..:: : .
NP_001 PTAPPYDSIQIYGYEGRGSVAGSLSSLESTTSDSDQNFDYLSDWGPRFKRLGELYSVGES
740 750 760 770 780 790
790
pF1KB5 DTFDDDS
:
NP_001 DKET
>>XP_016864418 (OMIM: 603019) PREDICTED: cadherin-18 iso (790 aa)
initn: 2546 init1: 1935 opt: 3100 Z-score: 3443.3 bits: 648.0 E(85289): 4.7e-185
Smith-Waterman score: 3100; 59.7% identity (82.1% similar) in 782 aa overlap (6-787:8-782)
10 20 30 40 50
pF1KB5 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWN
:. .:::: .. . .. : . .. . . .: .: : .: .: :::::::
XP_016 MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKVMRN-QTKHIEG-ETEVHHRPKRGWVWN
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 QFFVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDR
::::.::. :::: ::.:::. :.:::..::::.::::::::.::: .:.::.::.:::
XP_016 QFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 EERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSV
:....:.: :::.:: ::.:::: ::::.:::::::: :.: : ..::: :..::::
XP_016 EQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 IQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQA
.::::.:::::::::::..:::::.:::::::. .::.::::: ::::::.:.: :::::
XP_016 LQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 KDMGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIG
:::.:..:::::.: :.:::::::::::.:::. ::. : :.: : ::..::.: : :
XP_016 KDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 ENGLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKF
:. .::.:..:::: : :.:: ::.::...::::...: :..:.:..:.::.:.: .:
XP_016 SNADMTYSIINGDGMGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRF
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB5 ISNGPFKDTVTVKIAVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIR
:::::.. .:: : :.::::.: :::. :: ::: ::::: : :.:::..:: .:
XP_016 SHLGPFKDATMLKIIVGDVDEPPLFSMPSYLMEVYENAKIGTVVGTVLAQDPDSTNSLVR
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB5 YSIDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRV
: :. ... ::::.:. . : :.::: :::::: : :::: :.:: : ..: :.:::
XP_016 YFINYNVEDDRFFNIDANTGTIRTTKVLDREETPWYNITVTASEIDNPDLLSHVTVGIRV
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB5 LDVNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHN
:::::: :..: :. ..::. .:: .: : :::: :::: :::::: : : .. :
XP_016 LDVNDNPPELAREYDIIVCEN--SKP--GQVIHTISATDKDDFANGPRFNFFLDERLPVN
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB5 PNFTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVN
::::..::.::::.. .:: ::: ::.: :::.::::::: .::..::::.::.:. .
XP_016 PNFTLKDNEDNTASILTRRRRFSRTVQDVYYLPIMISDGGIPSLSSSSTLTIRVCACERD
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB5 GALLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRE
: . .:.:::.. .:::::::::::: :..:::.:::::.::::.::::::. ::::::
XP_016 GRVRTCHAEAFLSSAGLSTGALIAILLCVLILLAIVVLFITLRRSKKEPLII-SEEDVRE
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB5 NIITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVD
:..:::::::::::::::::..:.::.. . . :.::.:: . :: . .:.::.
XP_016 NVVTYDDEGGGEEDTEAFDITALRNPSAAEELKYRRDIRPEVKLTPRHQTSSTLESIDVQ
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB5 DFINTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPR
.::. :. ::: ::..:::::.: :.:::. : :::.:::.::::.:: :: :: .:::.
XP_016 EFIKQRLAEADLDPSVPPYDSLQTYAYEGQRSEAGSISSLDSATTQSDQDYHYLGDWGPE
720 730 740 750 760 770
780 790
pF1KB5 FKKLADLYGSKDTFDDDS
:::::.:::
XP_016 FKKLAELYGEIESERTT
780 790
>>XP_016864419 (OMIM: 603019) PREDICTED: cadherin-18 iso (790 aa)
initn: 2546 init1: 1935 opt: 3100 Z-score: 3443.3 bits: 648.0 E(85289): 4.7e-185
Smith-Waterman score: 3100; 59.7% identity (82.1% similar) in 782 aa overlap (6-787:8-782)
10 20 30 40 50
pF1KB5 MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKEGQVLQRSKRGWVWN
:. .:::: .. . .. : . .. . . .: .: : .: .: :::::::
XP_016 MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKVMRN-QTKHIEG-ETEVHHRPKRGWVWN
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 QFFVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDR
::::.::. :::: ::.:::. :.:::..::::.::::::::.::: .:.::.::.:::
XP_016 QFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 EERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSV
:....:.: :::.:: ::.:::: ::::.:::::::: :.: : ..::: :..::::
XP_016 EQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 IQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQA
.::::.:::::::::::..:::::.:::::::. .::.::::: ::::::.:.: :::::
XP_016 LQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 KDMGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIG
:::.:..:::::.: :.:::::::::::.:::. ::. : :.: : ::..::.: : :
XP_016 KDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 ENGLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVDFETKRAYSLKVEAANVHIDPKF
:. .::.:..:::: : :.:: ::.::...::::...: :..:.:..:.::.:.: .:
XP_016 SNADMTYSIINGDGMGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRF
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB5 ISNGPFKDTVTVKIAVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIR
:::::.. .:: : :.::::.: :::. :: ::: ::::: : :.:::..:: .:
XP_016 SHLGPFKDATMLKIIVGDVDEPPLFSMPSYLMEVYENAKIGTVVGTVLAQDPDSTNSLVR
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB5 YSIDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAIRV
: :. ... ::::.:. . : :.::: :::::: : :::: :.:: : ..: :.:::
XP_016 YFINYNVEDDRFFNIDANTGTIRTTKVLDREETPWYNITVTASEIDNPDLLSHVTVGIRV
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB5 LDVNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHN
:::::: :..: :. ..::. .:: .: : :::: :::: :::::: : : .. :
XP_016 LDVNDNPPELAREYDIIVCEN--SKP--GQVIHTISATDKDDFANGPRFNFFLDERLPVN
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB5 PNFTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVN
::::..::.::::.. .:: ::: ::.: :::.::::::: .::..::::.::.:. .
XP_016 PNFTLKDNEDNTASILTRRRRFSRTVQDVYYLPIMISDGGIPSLSSSSTLTIRVCACERD
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB5 GALLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRE
: . .:.:::.. .:::::::::::: :..:::.:::::.::::.::::::. ::::::
XP_016 GRVRTCHAEAFLSSAGLSTGALIAILLCVLILLAIVVLFITLRRSKKEPLII-SEEDVRE
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB5 NIITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVD
:..:::::::::::::::::..:.::.. . . :.::.:: . :: . .:.::.
XP_016 NVVTYDDEGGGEEDTEAFDITALRNPSAAEELKYRRDIRPEVKLTPRHQTSSTLESIDVQ
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB5 DFINTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPR
.::. :. ::: ::..:::::.: :.:::. : :::.:::.::::.:: :: :: .:::.
XP_016 EFIKQRLAEADLDPSVPPYDSLQTYAYEGQRSEAGSISSLDSATTQSDQDYHYLGDWGPE
720 730 740 750 760 770
780 790
pF1KB5 FKKLADLYGSKDTFDDDS
:::::.:::
XP_016 FKKLAELYGEIESERTT
780 790
796 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:20:58 2016 done: Thu Nov 3 22:21:00 2016
Total Scan time: 12.010 Total Display time: 0.270
Function used was FASTA [36.3.4 Apr, 2011]