Result of FASTA (omim) for
pF1KB5103
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5103, 700 aa
1>>>pF1KB5103 700 - 700 aa - 700 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2068+/-0.000456; mu= 15.6153+/- 0.028
mean_var=142.8064+/-26.170, 0's: 0 Z-trim(114.3): 216 B-trim: 33 in 1/51
Lambda= 0.107325
statistics sampled from 23802 (24108) to 23802 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.283), width: 16
Scan time: 9.130
The best scores are: opt bits E(85289)
NP_071920 (OMIM: 606178) hedgehog-interacting prot ( 700) 4896 770.9 0
XP_005263235 (OMIM: 606178) PREDICTED: hedgehog-in ( 682) 4773 751.9 1.9e-216
XP_006714351 (OMIM: 606178) PREDICTED: hedgehog-in ( 682) 4764 750.5 4.9e-216
NP_009122 (OMIM: 605186) wnt inhibitory factor 1 p ( 379) 245 50.5 1.4e-05
NP_001304101 (OMIM: 176290) protein delta homolog ( 310) 222 46.8 0.00015
NP_003827 (OMIM: 176290) protein delta homolog 1 i ( 383) 222 46.9 0.00017
XP_016864717 (OMIM: 121050,612570,616118) PREDICTE (2861) 230 49.1 0.00028
NP_001990 (OMIM: 121050,612570,616118) fibrillin-2 (2912) 230 49.1 0.00028
XP_016882865 (OMIM: 608529) PREDICTED: fibrillin-3 (2766) 228 48.8 0.00033
XP_016882864 (OMIM: 608529) PREDICTED: fibrillin-3 (2768) 228 48.8 0.00034
XP_016882862 (OMIM: 608529) PREDICTED: fibrillin-3 (2789) 228 48.8 0.00034
NP_001308360 (OMIM: 608529) fibrillin-3 precursor (2809) 228 48.8 0.00034
XP_016882861 (OMIM: 608529) PREDICTED: fibrillin-3 (2809) 228 48.8 0.00034
NP_115823 (OMIM: 608529) fibrillin-3 precursor [Ho (2809) 228 48.8 0.00034
XP_016882868 (OMIM: 608529) PREDICTED: fibrillin-3 (2851) 228 48.8 0.00034
NP_963845 (OMIM: 602319) protein kinase C-binding ( 763) 219 46.8 0.00037
XP_016882863 (OMIM: 608529) PREDICTED: fibrillin-3 (2777) 227 48.7 0.00037
NP_699197 (OMIM: 611691) sushi, von Willebrand fac (3571) 228 48.9 0.0004
NP_001275643 (OMIM: 602319) protein kinase C-bindi ( 753) 218 46.6 0.00041
NP_006148 (OMIM: 602319) protein kinase C-binding ( 810) 218 46.7 0.00043
NP_001275642 (OMIM: 602319) protein kinase C-bindi ( 838) 218 46.7 0.00044
NP_000129 (OMIM: 102370,129600,134797,154700,18490 (2871) 222 47.9 0.00065
NP_061947 (OMIM: 605185,616589) delta-like protein ( 685) 208 45.0 0.0011
XP_016884554 (OMIM: 600920,613619) PREDICTED: scav ( 617) 191 42.4 0.0065
NP_660142 (OMIM: 602570) protein jagged-2 isoform (1200) 195 43.3 0.0066
NP_002217 (OMIM: 602570) protein jagged-2 isoform (1238) 195 43.3 0.0068
XP_016870286 (OMIM: 608582) PREDICTED: epidermal g ( 219) 183 40.6 0.0077
XP_006717204 (OMIM: 608582) PREDICTED: epidermal g ( 219) 183 40.6 0.0077
NP_878315 (OMIM: 600920,613619) scavenger receptor ( 866) 191 42.5 0.0082
NP_699165 (OMIM: 600920,613619) scavenger receptor ( 871) 191 42.5 0.0082
>>NP_071920 (OMIM: 606178) hedgehog-interacting protein (700 aa)
initn: 4896 init1: 4896 opt: 4896 Z-score: 4109.8 bits: 770.9 E(85289): 0
Smith-Waterman score: 4896; 100.0% identity (100.0% similar) in 700 aa overlap (1-700:1-700)
10 20 30 40 50 60
pF1KB5 MLKMLSFKLLLLAVALGFFEGDAKFGERNEGSGARRRRCLNGNPPKRLKRRDRRMMSQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MLKMLSFKLLLLAVALGFFEGDAKFGERNEGSGARRRRCLNGNPPKRLKRRDRRMMSQLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LLSGGEMLCGGFYPRLSCCLRSDSPGLGRLENKIFSVTNNTECGKLLEEIKCALCSPHSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 LLSGGEMLCGGFYPRLSCCLRSDSPGLGRLENKIFSVTNNTECGKLLEEIKCALCSPHSQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SLFHSPEREVLERDLVLPLLCKDYCKEFFYTCRGHIPGFLQTTADEFCFYYARKDGGLCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 SLFHSPEREVLERDLVLPLLCKDYCKEFFYTCRGHIPGFLQTTADEFCFYYARKDGGLCF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PDFPRKQVRGPASNYLDQMEEYDKVEEISRKHKHNCFCIQEVVSGLRQPVGALHSGDGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 PDFPRKQVRGPASNYLDQMEEYDKVEEISRKHKHNCFCIQEVVSGLRQPVGALHSGDGSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 LEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 LEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 AQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 AQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKG
610 620 630 640 650 660
670 680 690 700
pF1KB5 YLGPQCEQVDRNIRRVTRAGILDQIIDMTSYLLDLTSYIV
::::::::::::::::::::::::::::::::::::::::
NP_071 YLGPQCEQVDRNIRRVTRAGILDQIIDMTSYLLDLTSYIV
670 680 690 700
>>XP_005263235 (OMIM: 606178) PREDICTED: hedgehog-intera (682 aa)
initn: 4804 init1: 4773 opt: 4773 Z-score: 4007.0 bits: 751.9 E(85289): 1.9e-216
Smith-Waterman score: 4773; 99.9% identity (99.9% similar) in 681 aa overlap (1-681:1-681)
10 20 30 40 50 60
pF1KB5 MLKMLSFKLLLLAVALGFFEGDAKFGERNEGSGARRRRCLNGNPPKRLKRRDRRMMSQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLKMLSFKLLLLAVALGFFEGDAKFGERNEGSGARRRRCLNGNPPKRLKRRDRRMMSQLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LLSGGEMLCGGFYPRLSCCLRSDSPGLGRLENKIFSVTNNTECGKLLEEIKCALCSPHSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLSGGEMLCGGFYPRLSCCLRSDSPGLGRLENKIFSVTNNTECGKLLEEIKCALCSPHSQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SLFHSPEREVLERDLVLPLLCKDYCKEFFYTCRGHIPGFLQTTADEFCFYYARKDGGLCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLFHSPEREVLERDLVLPLLCKDYCKEFFYTCRGHIPGFLQTTADEFCFYYARKDGGLCF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PDFPRKQVRGPASNYLDQMEEYDKVEEISRKHKHNCFCIQEVVSGLRQPVGALHSGDGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDFPRKQVRGPASNYLDQMEEYDKVEEISRKHKHNCFCIQEVVSGLRQPVGALHSGDGSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 LEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 AQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKG
610 620 630 640 650 660
670 680 690 700
pF1KB5 YLGPQCEQVDRNIRRVTRAGILDQIIDMTSYLLDLTSYIV
::::::::::::::::::: :
XP_005 YLGPQCEQVDRNIRRVTRADIT
670 680
>>XP_006714351 (OMIM: 606178) PREDICTED: hedgehog-intera (682 aa)
initn: 4764 init1: 4764 opt: 4764 Z-score: 3999.5 bits: 750.5 E(85289): 4.9e-216
Smith-Waterman score: 4764; 100.0% identity (100.0% similar) in 678 aa overlap (1-678:1-678)
10 20 30 40 50 60
pF1KB5 MLKMLSFKLLLLAVALGFFEGDAKFGERNEGSGARRRRCLNGNPPKRLKRRDRRMMSQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLKMLSFKLLLLAVALGFFEGDAKFGERNEGSGARRRRCLNGNPPKRLKRRDRRMMSQLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LLSGGEMLCGGFYPRLSCCLRSDSPGLGRLENKIFSVTNNTECGKLLEEIKCALCSPHSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLSGGEMLCGGFYPRLSCCLRSDSPGLGRLENKIFSVTNNTECGKLLEEIKCALCSPHSQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SLFHSPEREVLERDLVLPLLCKDYCKEFFYTCRGHIPGFLQTTADEFCFYYARKDGGLCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLFHSPEREVLERDLVLPLLCKDYCKEFFYTCRGHIPGFLQTTADEFCFYYARKDGGLCF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PDFPRKQVRGPASNYLDQMEEYDKVEEISRKHKHNCFCIQEVVSGLRQPVGALHSGDGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PDFPRKQVRGPASNYLDQMEEYDKVEEISRKHKHNCFCIQEVVSGLRQPVGALHSGDGSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 LEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 AQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKG
610 620 630 640 650 660
670 680 690 700
pF1KB5 YLGPQCEQVDRNIRRVTRAGILDQIIDMTSYLLDLTSYIV
::::::::::::::::::
XP_006 YLGPQCEQVDRNIRRVTRTSPR
670 680
>>NP_009122 (OMIM: 605186) wnt inhibitory factor 1 precu (379 aa)
initn: 618 init1: 210 opt: 245 Z-score: 221.0 bits: 50.5 E(85289): 1.4e-05
Smith-Waterman score: 253; 40.8% identity (63.2% similar) in 76 aa overlap (594-668:264-339)
570 580 590 600 610 620
pF1KB5 ILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNG-YCTPTGK
: .. : :.: . :::: : .:
NP_009 PGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSK
240 250 260 270 280 290
630 640 650 660 670 680
pF1KB5 CCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRRVTRAGIL
: :: :..::.: :::.: :.: .:::: :..:. : .:..
NP_009 CKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIHALRPAG
300 310 320 330 340 350
690 700
pF1KB5 DQIIDMTSYLLDLTSYIV
NP_009 AQLRQHTPSLKKAEERRDPPESNYIW
360 370
>>NP_001304101 (OMIM: 176290) protein delta homolog 1 is (310 aa)
initn: 181 init1: 134 opt: 222 Z-score: 202.8 bits: 46.8 E(85289): 0.00015
Smith-Waterman score: 222; 36.7% identity (58.2% similar) in 79 aa overlap (603-679:21-95)
580 590 600 610 620 630
pF1KB5 QTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLC--RNGYCTPTGKCCCSPGWE
: .:: : .::.: . : :.:::.
NP_001 MTATEALLRVLLLLLAFGHSTYGAECFPACNPQNGFCEDDNVCRCQPGWQ
10 20 30 40 50
640 650 660 670 680 690
pF1KB5 GDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRRVTRAGILDQIIDMTS
: .: :.: :: .: .:..:.: :. : : ::..: . :
NP_001 GPLCDQCVTSPGCLHG-LCGEPGQCICTDGWDGELC---DRDVRACSSAPCANNGTCVSL
60 70 80 90 100
700
pF1KB5 YLLDLTSYIV
NP_001 DDGLYECSCAPGYSGKDCQKKDGPCVINGSPCQHGGTCVDDEGRASHASCLCPPGFSGNF
110 120 130 140 150 160
>>NP_003827 (OMIM: 176290) protein delta homolog 1 isofo (383 aa)
initn: 181 init1: 134 opt: 222 Z-score: 201.7 bits: 46.9 E(85289): 0.00017
Smith-Waterman score: 222; 36.7% identity (58.2% similar) in 79 aa overlap (603-679:21-95)
580 590 600 610 620 630
pF1KB5 QTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLC--RNGYCTPTGKCCCSPGWE
: .:: : .::.: . : :.:::.
NP_003 MTATEALLRVLLLLLAFGHSTYGAECFPACNPQNGFCEDDNVCRCQPGWQ
10 20 30 40 50
640 650 660 670 680 690
pF1KB5 GDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRRVTRAGILDQIIDMTS
: .: :.: :: .: .:..:.: :. : : ::..: . :
NP_003 GPLCDQCVTSPGCLHG-LCGEPGQCICTDGWDGELC---DRDVRACSSAPCANNGTCVSL
60 70 80 90 100
700
pF1KB5 YLLDLTSYIV
NP_003 DDGLYECSCAPGYSGKDCQKKDGPCVINGSPCQHGGTCVDDEGRASHASCLCPPGFSGNF
110 120 130 140 150 160
>>XP_016864717 (OMIM: 121050,612570,616118) PREDICTED: f (2861 aa)
initn: 228 init1: 228 opt: 230 Z-score: 197.9 bits: 49.1 E(85289): 0.00028
Smith-Waterman score: 230; 41.9% identity (61.3% similar) in 62 aa overlap (607-668:148-209)
580 590 600 610 620 630
pF1KB5 GKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRT
.:: : :: .: :. :. : .:
XP_016 SCGDGFCSRPNMCTCSSGQISSTCGSKSIQQCSVRCMNGGTCADDHCQCQKGYIGTYCGQ
120 130 140 150 160 170
640 650 660 670 680 690
pF1KB5 AKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRRVTRAGILDQIIDMTSYLLDLT
:: .:..:: :. ::.: : :. :::::.
XP_016 PVCENGCQNGGRCIGPNRCACVYGFTGPQCERDYRTGPCFTQVNNQMCQGQLTGIVCTKT
180 190 200 210 220 230
700
pF1KB5 SYIV
XP_016 LCCATIGRAWGHPCEMCPAQPQPCRRGFIPNIRTGACQDVDECQAIPGICQGGNCINTVG
240 250 260 270 280 290
>>NP_001990 (OMIM: 121050,612570,616118) fibrillin-2 pre (2912 aa)
initn: 228 init1: 228 opt: 230 Z-score: 197.8 bits: 49.1 E(85289): 0.00028
Smith-Waterman score: 230; 41.9% identity (61.3% similar) in 62 aa overlap (607-668:148-209)
580 590 600 610 620 630
pF1KB5 GKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRT
.:: : :: .: :. :. : .:
NP_001 SCGDGFCSRPNMCTCSSGQISSTCGSKSIQQCSVRCMNGGTCADDHCQCQKGYIGTYCGQ
120 130 140 150 160 170
640 650 660 670 680 690
pF1KB5 AKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRRVTRAGILDQIIDMTSYLLDLT
:: .:..:: :. ::.: : :. :::::.
NP_001 PVCENGCQNGGRCIGPNRCACVYGFTGPQCERDYRTGPCFTQVNNQMCQGQLTGIVCTKT
180 190 200 210 220 230
700
pF1KB5 SYIV
NP_001 LCCATIGRAWGHPCEMCPAQPQPCRRGFIPNIRTGACQDVDECQAIPGICQGGNCINTVG
240 250 260 270 280 290
>>XP_016882865 (OMIM: 608529) PREDICTED: fibrillin-3 iso (2766 aa)
initn: 331 init1: 223 opt: 228 Z-score: 196.4 bits: 48.8 E(85289): 0.00033
Smith-Waterman score: 228; 36.1% identity (59.0% similar) in 83 aa overlap (591-668:98-180)
570 580 590 600 610
pF1KB5 EVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECR---ATVQPAQTLT--SECSRLCRNG
:. : .:. :. .. : :: : ::
XP_016 CCPGWRTFPGRSQCVVPICRRACGEGFCSQPNLCTCADGTLAPSCGVSRGSGCSVSCMNG
70 80 90 100 110 120
620 630 640 650 660 670
pF1KB5 YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRR
..: :. :. : : :. .:..:: :. ::.: : :..:::::.
XP_016 GTCRGASCLCQKGYTGTVCGQPICDRGCHNGGRCIGPNRCACVYGFMGPQCERDYRTGPC
130 140 150 160 170 180
680 690 700
pF1KB5 VTRAGILDQIIDMTSYLLDLTSYIV
XP_016 FGQVGPEGCQHQLTGLVCTKALCCATVGRAWGLPCELCPAQPHPCRRGFIPNIHTGACQD
190 200 210 220 230 240
>>XP_016882864 (OMIM: 608529) PREDICTED: fibrillin-3 iso (2768 aa)
initn: 331 init1: 223 opt: 228 Z-score: 196.4 bits: 48.8 E(85289): 0.00034
Smith-Waterman score: 228; 36.1% identity (59.0% similar) in 83 aa overlap (591-668:98-180)
570 580 590 600 610
pF1KB5 EVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEECR---ATVQPAQTLT--SECSRLCRNG
:. : .:. :. .. : :: : ::
XP_016 CCPGWRTFPGRSQCVVPICRRACGEGFCSQPNLCTCADGTLAPSCGVSRGSGCSVSCMNG
70 80 90 100 110 120
620 630 640 650 660 670
pF1KB5 YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRR
..: :. :. : : :. .:..:: :. ::.: : :..:::::.
XP_016 GTCRGASCLCQKGYTGTVCGQPICDRGCHNGGRCIGPNRCACVYGFMGPQCERDYRTGPC
130 140 150 160 170 180
680 690 700
pF1KB5 VTRAGILDQIIDMTSYLLDLTSYIV
XP_016 FGQVGPEGCQHQLTGLVCTKALCCATVGRAWGLPCELCPAQPHPCRRGFIPNIHTGACQD
190 200 210 220 230 240
700 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:16:58 2016 done: Thu Nov 3 22:16:59 2016
Total Scan time: 9.130 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]