Result of FASTA (ccds) for
pF1KB5095
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5095, 974 aa
1>>>pF1KB5095 974 - 974 aa - 974 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8647+/-0.000883; mu= 18.8292+/- 0.053
mean_var=78.6881+/-15.524, 0's: 0 Z-trim(106.8): 18 B-trim: 24 in 1/48
Lambda= 0.144584
statistics sampled from 9195 (9213) to 9195 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.283), width: 16
Scan time: 4.400
The best scores are: opt bits E(32554)
CCDS43348.1 PAM gene_id:5066|Hs108|chr5 ( 974) 6619 1390.8 0
CCDS54885.1 PAM gene_id:5066|Hs108|chr5 ( 973) 6602 1387.3 0
CCDS4092.1 PAM gene_id:5066|Hs108|chr5 ( 905) 5711 1201.4 0
CCDS4094.1 PAM gene_id:5066|Hs108|chr5 ( 887) 5695 1198.1 0
CCDS4093.1 PAM gene_id:5066|Hs108|chr5 ( 866) 3218 681.4 2.1e-195
>>CCDS43348.1 PAM gene_id:5066|Hs108|chr5 (974 aa)
initn: 6619 init1: 6619 opt: 6619 Z-score: 7454.8 bits: 1390.8 E(32554): 0
Smith-Waterman score: 6619; 100.0% identity (100.0% similar) in 974 aa overlap (1-974:1-974)
10 20 30 40 50 60
pF1KB5 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 HHKETEYKDKIPLLQQPKREEEEVLDQGDFYSLLSKLLGEREDVVHVHKYNPTEKAESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HHKETEYKDKIPLLQQPKREEEEVLDQGDFYSLLSKLLGEREDVVHVHKYNPTEKAESES
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 DLVAEIANVVQKKDLGRSDAREGAEHERGNAILVRDRIHKFHRLVSTLRPPESRVFSLQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DLVAEIANVVQKKDLGRSDAREGAEHERGNAILVRDRIHKFHRLVSTLRPPESRVFSLQQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 PPPGEGTWEPEHTGDFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PPPGEGTWEPEHTGDFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB5 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIKEAEAVVETKMEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIKEAEAVVETKMEN
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB5 KPTSSELQKMQEKQKLIKEPGSGVPVVLITTLLVIPVVVLLAIAIFIRWKKSRAFGADSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KPTSSELQKMQEKQKLIKEPGSGVPVVLITTLLVIPVVVLLAIAIFIRWKKSRAFGADSE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB5 HKLETSSGRVLGRFRGKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HKLETSSGRVLGRFRGKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
910 920 930 940 950 960
970
pF1KB5 EYSAPLPALAPSSS
::::::::::::::
CCDS43 EYSAPLPALAPSSS
970
>>CCDS54885.1 PAM gene_id:5066|Hs108|chr5 (973 aa)
initn: 6111 init1: 6111 opt: 6602 Z-score: 7435.7 bits: 1387.3 E(32554): 0
Smith-Waterman score: 6602; 99.9% identity (99.9% similar) in 974 aa overlap (1-974:1-973)
10 20 30 40 50 60
pF1KB5 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 HHKETEYKDKIPLLQQPKREEEEVLDQGDFYSLLSKLLGEREDVVHVHKYNPTEKAESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HHKETEYKDKIPLLQQPKREEEEVLDQGDFYSLLSKLLGEREDVVHVHKYNPTEKAESES
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 DLVAEIANVVQKKDLGRSDAREGAEHERGNAILVRDRIHKFHRLVSTLRPPESRVFSLQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DLVAEIANVVQKKDLGRSDAREGAEHERGNAILVRDRIHKFHRLVSTLRPPESRVFSLQQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 PPPGEGTWEPEHTGDFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PPPGEGTWEPEHTGDFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB5 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIKEAEAVVETKMEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIKEAEAVVETKMEN
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB5 KPTSSELQKMQEKQKLIKEPGSGVPVVLITTLLVIPVVVLLAIAIFIRWKKSRAFGADSE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS54 KPTSSELQKMQEKQKLIKEPGSGVPVVLITTLLVIPVVVLLAIAIFIRWKKSRAFG-DSE
850 860 870 880 890
910 920 930 940 950 960
pF1KB5 HKLETSSGRVLGRFRGKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HKLETSSGRVLGRFRGKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
900 910 920 930 940 950
970
pF1KB5 EYSAPLPALAPSSS
::::::::::::::
CCDS54 EYSAPLPALAPSSS
960 970
>>CCDS4092.1 PAM gene_id:5066|Hs108|chr5 (905 aa)
initn: 5711 init1: 5711 opt: 5711 Z-score: 6431.7 bits: 1201.4 E(32554): 0
Smith-Waterman score: 6050; 92.9% identity (92.9% similar) in 974 aa overlap (1-974:1-905)
10 20 30 40 50 60
pF1KB5 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 HHKETEYKDKIPLLQQPKREEEEVLDQGDFYSLLSKLLGEREDVVHVHKYNPTEKAESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 HHKETEYKDKIPLLQQPKREEEEVLDQGDFYSLLSKLLGEREDVVHVHKYNPTEKAESES
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 DLVAEIANVVQKKDLGRSDAREGAEHERGNAILVRDRIHKFHRLVSTLRPPESRVFSLQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DLVAEIANVVQKKDLGRSDAREGAEHERGNAILVRDRIHKFHRLVSTLRPPESRVFSLQQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 PPPGEGTWEPEHTGDFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PPPGEGTWEPEHTGDFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB5 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIKEAEAVVETKMEN
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIK------------
790 800 810 820
850 860 870 880 890 900
pF1KB5 KPTSSELQKMQEKQKLIKEPGSGVPVVLITTLLVIPVVVLLAIAIFIRWKKSRAFGADSE
:::
CCDS40 ---------------------------------------------------------DSE
830
910 920 930 940 950 960
pF1KB5 HKLETSSGRVLGRFRGKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 HKLETSSGRVLGRFRGKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
840 850 860 870 880 890
970
pF1KB5 EYSAPLPALAPSSS
::::::::::::::
CCDS40 EYSAPLPALAPSSS
900
>>CCDS4094.1 PAM gene_id:5066|Hs108|chr5 (887 aa)
initn: 5695 init1: 5695 opt: 5695 Z-score: 6413.8 bits: 1198.1 E(32554): 0
Smith-Waterman score: 5898; 91.1% identity (91.1% similar) in 974 aa overlap (1-974:1-887)
10 20 30 40 50 60
pF1KB5 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 HHKETEYKDKIPLLQQPKREEEEVLDQGDFYSLLSKLLGEREDVVHVHKYNPTEKAESES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 HHKETEYKDKIPLLQQPKREEEEVLDQGDFYSLLSKLLGEREDVVHVHKYNPTEKAESES
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 DLVAEIANVVQKKDLGRSDAREGAEHERGNAILVRDRIHKFHRLVSTLRPPESRVFSLQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DLVAEIANVVQKKDLGRSDAREGAEHERGNAILVRDRIHKFHRLVSTLRPPESRVFSLQQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 PPPGEGTWEPEHTGDFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PPPGEGTWEPEHTGDFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB5 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIKEAEAVVETKMEN
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIK------------
790 800 810 820
850 860 870 880 890 900
pF1KB5 KPTSSELQKMQEKQKLIKEPGSGVPVVLITTLLVIPVVVLLAIAIFIRWKKSRAFGADSE
CCDS40 ------------------------------------------------------------
910 920 930 940 950 960
pF1KB5 HKLETSSGRVLGRFRGKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
:::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ---------------GKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
830 840 850 860 870
970
pF1KB5 EYSAPLPALAPSSS
::::::::::::::
CCDS40 EYSAPLPALAPSSS
880
>>CCDS4093.1 PAM gene_id:5066|Hs108|chr5 (866 aa)
initn: 5381 init1: 2717 opt: 3218 Z-score: 3621.6 bits: 681.4 E(32554): 2.1e-195
Smith-Waterman score: 5662; 88.9% identity (88.9% similar) in 974 aa overlap (1-974:1-866)
10 20 30 40 50 60
pF1KB5 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MAGRVPSLLVLLVFPSSCLAFRSPLSVFKRFKETTRPFSNECLGTTRPVVPIDSSDFALD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 CDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 CSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 HHKETEYKDKIPLLQQPKREEEEVLDQGDFYSLLSKLLGEREDVVHVHKYNPTEKAESES
:::::::::::::::::::::::::::
CCDS40 HHKETEYKDKIPLLQQPKREEEEVLDQ---------------------------------
370 380
430 440 450 460 470 480
pF1KB5 DLVAEIANVVQKKDLGRSDAREGAEHERGNAILVRDRIHKFHRLVSTLRPPESRVFSLQQ
CCDS40 ------------------------------------------------------------
490 500 510 520 530 540
pF1KB5 PPPGEGTWEPEHTGDFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 --------------DFHMEEALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDHVWDGNSF
390 400 410 420 430
550 560 570 580 590 600
pF1KB5 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALH
440 450 460 470 480 490
610 620 630 640 650 660
pF1KB5 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFS
500 510 520 530 540 550
670 680 690 700 710 720
pF1KB5 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVR
560 570 580 590 600 610
730 740 750 760 770 780
pF1KB5 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EIKHSSFGRNVFAISYIPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFD
620 630 640 650 660 670
790 800 810 820 830 840
pF1KB5 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIKEAEAVVETKMEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MPHDIVASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIEVQEIKEAEAVVETKMEN
680 690 700 710 720 730
850 860 870 880 890 900
pF1KB5 KPTSSELQKMQEKQKLIKEPGSGVPVVLITTLLVIPVVVLLAIAIFIRWKKSRAFGADSE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS40 KPTSSELQKMQEKQKLIKEPGSGVPVVLITTLLVIPVVVLLAIAIFIRWKKSRAFG-DSE
740 750 760 770 780 790
910 920 930 940 950 960
pF1KB5 HKLETSSGRVLGRFRGKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 HKLETSSGRVLGRFRGKGSGGLNLGNFFASRKGYSRKGFDRLSTEGSDQEKEDDGSESEE
800 810 820 830 840 850
970
pF1KB5 EYSAPLPALAPSSS
::::::::::::::
CCDS40 EYSAPLPALAPSSS
860
974 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:14:58 2016 done: Sat Nov 5 07:14:59 2016
Total Scan time: 4.400 Total Display time: 0.220
Function used was FASTA [36.3.4 Apr, 2011]