FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5072, 616 aa
  1>>>pF1KB5072 616 - 616 aa - 616 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9887+/-0.00102; mu= 8.0750+/- 0.062
 mean_var=137.5292+/-28.529, 0's: 0 Z-trim(108.8): 6  B-trim: 536 in 1/50
 Lambda= 0.109365
 statistics sampled from 10427 (10430) to 10427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.32), width:  16
 Scan time:  3.490

The best scores are:                                      opt bits E(32554)
CCDS11014.1 RPA1 gene_id:6117|Hs108|chr17          ( 616) 4040 649.1  5e-186


>>CCDS11014.1 RPA1 gene_id:6117|Hs108|chr17               (616 aa)
 initn: 4040 init1: 4040 opt: 4040  Z-score: 3453.2  bits: 649.1 E(32554): 5e-186
Smith-Waterman score: 4040; 99.8% identity (100.0% similar) in 616 aa overlap (1-616:1-616)

               10        20        30        40        50        60
pF1KB5 MVGQLSEGAIAAIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVGQLSEGAIAAIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 GLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDASGKVVTATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS11 DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 ALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 CPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 GQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYR
              550       560       570       580       590       600

              610      
pF1KB5 EYGRRLVMSIRRSALM
       ::::::::::::::::
CCDS11 EYGRRLVMSIRRSALM
              610      




616 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:53:38 2016 done: Thu Nov  3 15:53:39 2016
 Total Scan time:  3.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]