Result of FASTA (omim) for
pF1KB5068
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5068, 547 aa
1>>>pF1KB5068 547 - 547 aa - 547 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1827+/-0.000376; mu= 14.7078+/- 0.023
mean_var=84.8560+/-16.805, 0's: 0 Z-trim(114.7): 116 B-trim: 0 in 0/50
Lambda= 0.139230
statistics sampled from 24652 (24768) to 24652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.29), width: 16
Scan time: 11.220
The best scores are: opt bits E(85289)
NP_061955 (OMIM: 608023) probable ATP-dependent RN ( 547) 3588 730.7 2.7e-210
NP_001244118 (OMIM: 608023) probable ATP-dependent ( 507) 1887 389.0 1.8e-107
NP_060365 (OMIM: 616621) probable ATP-dependent RN ( 796) 581 126.8 2.5e-28
XP_011527190 (OMIM: 616621) PREDICTED: probable AT ( 827) 489 108.3 9.5e-23
NP_006764 (OMIM: 606355) ATP-dependent RNA helicas ( 670) 467 103.9 1.7e-21
XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775) 452 100.9 1.5e-20
NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 452 100.9 1.8e-20
NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 452 100.9 1.8e-20
XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 452 100.9 1.8e-20
XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 452 100.9 1.8e-20
NP_076977 (OMIM: 611665) ATP-dependent RNA helicas ( 881) 444 99.3 5.3e-20
NP_001104792 (OMIM: 611665) ATP-dependent RNA heli ( 882) 444 99.3 5.3e-20
NP_004389 (OMIM: 601235) probable ATP-dependent RN ( 875) 436 97.7 1.6e-19
XP_011522561 (OMIM: 613369) PREDICTED: ATP-depende ( 674) 414 93.2 2.7e-18
NP_001278405 (OMIM: 612500) probable ATP-dependent ( 491) 409 92.2 4.2e-18
XP_011522534 (OMIM: 612500) PREDICTED: probable AT ( 581) 409 92.2 4.8e-18
NP_008941 (OMIM: 612500) probable ATP-dependent RN ( 599) 409 92.2 4.9e-18
NP_004809 (OMIM: 612172) probable ATP-dependent RN ( 820) 402 90.9 1.7e-17
NP_001160006 (OMIM: 605281) probable ATP-dependent ( 575) 391 88.6 5.8e-17
XP_011541799 (OMIM: 605281) PREDICTED: probable AT ( 678) 391 88.6 6.7e-17
NP_619526 (OMIM: 616533) probable ATP-dependent RN ( 585) 390 88.4 6.8e-17
NP_001136021 (OMIM: 605281) probable ATP-dependent ( 690) 391 88.6 6.8e-17
XP_011541797 (OMIM: 605281) PREDICTED: probable AT ( 698) 391 88.6 6.9e-17
NP_001160005 (OMIM: 605281) probable ATP-dependent ( 704) 391 88.6 6.9e-17
NP_077726 (OMIM: 605281) probable ATP-dependent RN ( 724) 391 88.6 7.1e-17
XP_006717299 (OMIM: 616533) PREDICTED: probable AT ( 691) 390 88.4 7.8e-17
XP_011517224 (OMIM: 616533) PREDICTED: probable AT ( 691) 390 88.4 7.8e-17
NP_001309269 (OMIM: 616533) probable ATP-dependent ( 778) 390 88.4 8.7e-17
XP_011517223 (OMIM: 616533) PREDICTED: probable AT ( 787) 390 88.4 8.8e-17
NP_073616 (OMIM: 616533) probable ATP-dependent RN ( 851) 390 88.5 9.4e-17
NP_001317367 (OMIM: 607663) ATP-dependent RNA heli ( 369) 369 84.1 8.5e-16
NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455) 364 83.1 2e-15
NP_065147 (OMIM: 606181) ATP-dependent RNA helicas ( 859) 350 80.4 2.5e-14
NP_004631 (OMIM: 142560) spliceosome RNA helicase ( 428) 335 77.3 1.1e-13
NP_542165 (OMIM: 142560) spliceosome RNA helicase ( 428) 335 77.3 1.1e-13
NP_060850 (OMIM: 607618) probable ATP-dependent RN ( 540) 310 72.3 4.4e-12
NP_957518 (OMIM: 615428) probable ATP-dependent RN ( 406) 298 69.8 1.8e-11
NP_001244120 (OMIM: 600326) probable ATP-dependent ( 483) 290 68.2 6.4e-11
NP_004388 (OMIM: 600326) probable ATP-dependent RN ( 483) 290 68.2 6.4e-11
XP_005271474 (OMIM: 600326) PREDICTED: probable AT ( 483) 290 68.2 6.4e-11
XP_016872740 (OMIM: 600326) PREDICTED: probable AT ( 440) 288 67.8 7.8e-11
XP_011540946 (OMIM: 600326) PREDICTED: probable AT ( 440) 288 67.8 7.8e-11
NP_001191439 (OMIM: 602641) eukaryotic initiation ( 347) 278 65.8 2.6e-10
NP_001407 (OMIM: 602641) eukaryotic initiation fac ( 406) 278 65.8 2.9e-10
NP_001958 (OMIM: 601102) eukaryotic initiation fac ( 407) 266 63.4 1.6e-09
NP_009173 (OMIM: 605812) ATP-dependent RNA helicas ( 479) 260 62.2 4.2e-09
XP_011521136 (OMIM: 605812) PREDICTED: ATP-depende ( 484) 260 62.2 4.2e-09
XP_011521134 (OMIM: 605812) PREDICTED: ATP-depende ( 539) 260 62.2 4.6e-09
XP_016872399 (OMIM: 606357) PREDICTED: nucleolar R ( 661) 258 61.9 7.2e-09
XP_011538638 (OMIM: 606357) PREDICTED: nucleolar R ( 729) 258 61.9 7.9e-09
>>NP_061955 (OMIM: 608023) probable ATP-dependent RNA he (547 aa)
initn: 3588 init1: 3588 opt: 3588 Z-score: 3896.4 bits: 730.7 E(85289): 2.7e-210
Smith-Waterman score: 3588; 100.0% identity (100.0% similar) in 547 aa overlap (1-547:1-547)
10 20 30 40 50 60
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 YAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 AEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCET
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 ISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 DLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENRGPILLPYQFRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENRGPILLPYQFRM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 HPAVVKPHLGHVPDYLVPPALRGLVRPHKKRKKLSSSCRKAKRAKSQNPLRSFKHKGKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 HPAVVKPHLGHVPDYLVPPALRGLVRPHKKRKKLSSSCRKAKRAKSQNPLRSFKHKGKKF
490 500 510 520 530 540
pF1KB5 RPTAKPS
:::::::
NP_061 RPTAKPS
>>NP_001244118 (OMIM: 608023) probable ATP-dependent RNA (507 aa)
initn: 1887 init1: 1887 opt: 1887 Z-score: 2050.3 bits: 389.0 E(85289): 1.8e-107
Smith-Waterman score: 3214; 92.7% identity (92.7% similar) in 547 aa overlap (1-547:1-507)
10 20 30 40 50 60
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 YAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 AEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCET
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSR---
250 260 270 280 290
310 320 330 340 350 360
pF1KB5 ISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNF
:::::::::::::::::::::::
NP_001 -------------------------------------ASDPEAGVARGIDFHHVSAVLNF
300 310 320
370 380 390 400 410 420
pF1KB5 DLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENRGPILLPYQFRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENRGPILLPYQFRM
330 340 350 360 370 380
430 440 450 460 470 480
pF1KB5 EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPL
390 400 410 420 430 440
490 500 510 520 530 540
pF1KB5 HPAVVKPHLGHVPDYLVPPALRGLVRPHKKRKKLSSSCRKAKRAKSQNPLRSFKHKGKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPAVVKPHLGHVPDYLVPPALRGLVRPHKKRKKLSSSCRKAKRAKSQNPLRSFKHKGKKF
450 460 470 480 490 500
pF1KB5 RPTAKPS
:::::::
NP_001 RPTAKPS
>>NP_060365 (OMIM: 616621) probable ATP-dependent RNA he (796 aa)
initn: 553 init1: 293 opt: 581 Z-score: 629.6 bits: 126.8 E(85289): 2.5e-28
Smith-Waterman score: 660; 28.7% identity (60.5% similar) in 564 aa overlap (5-539:216-742)
10 20 30
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQ
: :.:. :.:. ::.:.: .:...:: ::
NP_060 ADTLKVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQ
190 200 210 220 230 240
40 50 60 70 80 90
pF1KB5 EKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKEL
. ::..: :::. : : ::.:::::.:.:.:. :... .:: .: ::::::.::
NP_060 KACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV----TRVLVLVPTREL
250 260 270 280 290 300
100 110 120 130 140 150
pF1KB5 ARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQ-DS
. :..:. .::: .: .. . . .. : ::.:.: ::....::.:...::.. :
NP_060 GIQVHSVTRQLAQFC--NITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS
310 320 330 340 350
160 170 180 190 200 210
pF1KB5 LKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILH
..: .:.:.:..:::: ... :::..: .. . :..:.:::....:. : . :.
NP_060 FHL-SSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK
360 370 380 390 400 410
220 230 240 250 260 270
pF1KB5 NPVTLKLQESQLPGPDQLQQF-QVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSY
::: . .. . .: :.: .. . : :. .. ::: .. . .::..: ....
NP_060 NPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFT-DHVMLFTQTKKQAH
420 430 440 450 460 470
280 290 300 310 320 330
pF1KB5 RLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRG
:....: ... . :.:.: .: . . .:.. : ..:::.
NP_060 RMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDV---------------
480 490 500 510 520
340 350 360 370 380 390
pF1KB5 PKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPT
.:::.:.. :..:.:: .: : . :.::.::::::. : ...:
NP_060 ------------AARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGED
530 540 550 560 570
400 410 420 430 440
pF1KB5 EQFHLGKIEELLSGENRGPIL-----LPYQFRMEEIEGFRYRC------RDAMRSVTKQA
:. : .: . .. .. :: : .. ..:..: : . :.. :
NP_060 ERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQI
580 590 600 610 620 630
450 460 470 480 490
pF1KB5 IREARLKEIKEELLHSEKLKTYFEDNPRDLQ------LLRHDLPLHPAVVKPHLGHVPDY
:: : .: . .: ...:. . . . : . :: :. : . . :
NP_060 NTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAKALQEFDLALRGK--KKRKKFMKDA
640 650 660 670 680
500 510 520 530 540
pF1KB5 LVPPALRG-------LVRPHKKRKKLSSSCRKAKRAKS---QNPLRSFKHKGKKFRPTAK
. . ... . ..:.. :.::::.. ..:.:. .: :.
NP_060 KKKGEMTAEERSQFEILKAQMFAERLAKRNRRAKRARAMPEEEPVRGPAKKQKQGKKSVF
690 700 710 720 730 740
pF1KB5 PS
NP_060 DEELTNTSKKALKQYRAGPSFEERKQLGLPHQRRGGNFKSKSRYKRRK
750 760 770 780 790
>>XP_011527190 (OMIM: 616621) PREDICTED: probable ATP-de (827 aa)
initn: 622 init1: 196 opt: 489 Z-score: 529.4 bits: 108.3 E(85289): 9.5e-23
Smith-Waterman score: 591; 27.6% identity (57.3% similar) in 595 aa overlap (5-539:216-773)
10 20 30
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQ
: :.:. :.:. ::.:.: .:...:: ::
XP_011 ADTLKVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQ
190 200 210 220 230 240
40 50 60 70 80 90
pF1KB5 EKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKEL
. ::..: :::. : : ::.:::::.:.:.:. :... .:: .: ::::::.::
XP_011 KACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV----TRVLVLVPTREL
250 260 270 280 290 300
100 110 120 130 140 150
pF1KB5 ARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQ-DS
. :..:. .::: .: .. . . .. : ::.:.: ::....::.:...::.. :
XP_011 GIQVHSVTRQLAQFC--NITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS
310 320 330 340 350
160 170 180
pF1KB5 LKLRDSLELLVVDEAD----------------LLFSFG---------------FEEELKS
..: .:.:.:..:::: : . : :::..:
XP_011 FHL-SSIEVLILDEADSPPVDTAWPHAPTLWLLHLPFPQPGAISCPFRMLDEYFEEQMKE
360 370 380 390 400 410
190 200 210 220 230 240
pF1KB5 LLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQF-QVVCETE
.. . :..:.:::....:. : . :.::: . .. . .: :.: .. . :
XP_011 IIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNRE
420 430 440 450 460 470
250 260 270 280 290 300
pF1KB5 EDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHII
:. .. ::: .. . .::..: ....:....: ... . :.:.: .: . .
XP_011 GDREAIVAALLTRTFT-DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEAL
480 490 500 510 520 530
310 320 330 340 350 360
pF1KB5 SQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFD
.:.. : ..:::. .:::.:.. :..:.::
XP_011 RRFKDEQIDILVATDV---------------------------AARGLDIEGVKTVINFT
540 550 560 570
370 380 390 400 410
pF1KB5 LPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENRGPIL-----LPY
.: : . :.::.::::::. : ...: :. : .: . .. .. :: : .
XP_011 MPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKF
580 590 600 610 620 630
420 430 440 450 460 470
pF1KB5 QFRMEEIEGFRYRC------RDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRD
. ..:..: : . :.. : :: : .: . .: ...:. . .
XP_011 RDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEER
640 650 660 670 680 690
480 490 500 510
pF1KB5 LQ------LLRHDLPLHPAVVKPHLGHVPDYLVPPALRG-------LVRPHKKRKKLSSS
. : . :: :. : . . : . . ... . ..:..
XP_011 KKEKIAKALQEFDLALRGK--KKRKKFMKDAKKKGEMTAEERSQFEILKAQMFAERLAKR
700 710 720 730 740
520 530 540
pF1KB5 CRKAKRAKS---QNPLRSFKHKGKKFRPTAKPS
:.::::.. ..:.:. .: :.
XP_011 NRRAKRARAMPEEEPVRGPAKKQKQGKKSVFDEELTNTSKKALKQYRAGPSFEERKQLGL
750 760 770 780 790 800
>>NP_006764 (OMIM: 606355) ATP-dependent RNA helicase DD (670 aa)
initn: 481 init1: 188 opt: 467 Z-score: 507.0 bits: 103.9 E(85289): 1.7e-21
Smith-Waterman score: 549; 28.5% identity (59.7% similar) in 529 aa overlap (19-539:191-661)
10 20 30 40
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAI-PLALEGKDL
:.:. ..:.. : ::.:.: :: :::.::
NP_006 SEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPL-LEGRDL
170 180 190 200 210
50 60 70 80 90 100
pF1KB5 LARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLAT
:: :.:::::: :. :: ..:... . : .: :.: ::.::: :. .....: :
NP_006 LAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGV--LILSPTRELAMQTFGVLKELMT
220 230 240 250 260 270
110 120 130 140 150 160
pF1KB5 YCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDE
. .. . .. ... .:. : . ...:.::.:.:.:.:. . .:. ::.::
NP_006 HHVHTYGLIMGGSNRSAEAQK--LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE
280 290 300 310 320 330
170 180 190 200 210 220
pF1KB5 ADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHN-PVTLKLQESQLP
:: ... :::::::... :: :..:.::: .. :. : .. :.. :. . .....
NP_006 ADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKAN
340 350 360 370 380 390
230 240 250 260 270 280
pF1KB5 GP-DQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT
. : :.: ::: .:. .::::...:: . . ..: . . .:. .: :. ...:.
NP_006 ATVDGLEQGYVVCPSEK-RFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYEL-LNYIDLPV
400 410 420 430 440 450
290 300 310 320 330 340
pF1KB5 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGV
...:. .: . :: .. .. ::. .
NP_006 LAIHGKQKQNKRTTTFFQFCNADSGTLLCTDV---------------------------A
460 470 480
350 360 370 380 390 400
pF1KB5 ARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARA-NNPGIVLTFVLPTEQFHLGKIEELL
:::.:. .:. ....: : :. ::::.:::::. :. : .: .. : : :: .. :
NP_006 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEE---LGFLRYL-
490 500 510 520 530 540
410 420 430 440 450 460
pF1KB5 SGENRGPILLPYQFRMEEIEGFRYRCRDAMRS--VTKQAIREARLKEIKEELLHSEKLKT
... : : ..: .: .. . . ... ... .:: . :. :: ::
NP_006 -KQSKVP-LSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQ
550 560 570 580 590
470 480 490 500 510 520
pF1KB5 YFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPH--KKRKKLSSSCRK
: : .:.: :... . ::: . : . :..:. ...
NP_006 IF--NVNNLNL-------------PQVALSFGFKVPPFVDLNVNSNEGKQKKRGGGGGFG
600 610 620 630 640
530 540
pF1KB5 AKRAKSQNPLRSFKHKGKKFRPTAKPS
...:. . . ::: .::
NP_006 YQKTKKVEKSKIFKHISKKSSDSRQFSH
650 660 670
>>XP_016879601 (OMIM: 613369) PREDICTED: ATP-dependent R (775 aa)
initn: 384 init1: 148 opt: 452 Z-score: 489.7 bits: 100.9 E(85289): 1.5e-20
Smith-Waterman score: 525; 27.7% identity (59.9% similar) in 401 aa overlap (9-409:92-459)
10 20 30
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAI
: :.:.: .:.. . ...:: :: ...
XP_016 TNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGV
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB5 PLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQA
:.:: :.:... :.::::::::. ::: .. .: : .. .... ::.:: .:
XP_016 PVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEP--GDGPIAVIVCPTRELCQQI
130 140 150 160 170
100 110 120 130 140 150
pF1KB5 QSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRD
.. .... : ..: . : .. . : .:.: ..:: ::.:...:... . .:.
XP_016 HAECKRFGK--AYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-
180 190 200 210 220 230
160 170 180 190 200 210
pF1KB5 SLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTL
. :: :::: .:..::: ...:. :. :..:.:::: . .. : . :: .:. .
XP_016 RVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRV
240 250 260 270 280 290
220 230 240 250 260 270
pF1KB5 KLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFL
.: . . ... :. . .. .:. : : :. ::::. . .: :
XP_016 -VQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNL
300 310 320 330 340 350
280 290 300 310 320 330
pF1KB5 EQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKA
.: . .:.:.. : ..::.:.. ..:::.
XP_016 KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDV---------------------
360 370 380 390
340 350 360 370 380 390
pF1KB5 SDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLG
.:::.:. ...:.:.:. ... :: :::.::.. :.. :.. : .. :
XP_016 ------AARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG
400 410 420 430 440
400 410 420 430 440 450
pF1KB5 KIEELLSGENRGPILLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSE
. . : : :.
XP_016 DLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENM
450 460 470 480 490 500
>>NP_031398 (OMIM: 613369) ATP-dependent RNA helicase DD (938 aa)
initn: 384 init1: 148 opt: 452 Z-score: 488.4 bits: 100.9 E(85289): 1.8e-20
Smith-Waterman score: 525; 27.7% identity (59.9% similar) in 401 aa overlap (9-409:255-622)
10 20 30
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAI
: :.:.: .:.. . ...:: :: ...
NP_031 TNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGV
230 240 250 260 270 280
40 50 60 70 80 90
pF1KB5 PLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQA
:.:: :.:... :.::::::::. ::: .. .: : .. .... ::.:: .:
NP_031 PVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEP--GDGPIAVIVCPTRELCQQI
290 300 310 320 330 340
100 110 120 130 140 150
pF1KB5 QSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRD
.. .... : ..: . : .. . : .:.: ..:: ::.:...:... . .:.
NP_031 HAECKRFGK--AYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-
350 360 370 380 390
160 170 180 190 200 210
pF1KB5 SLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTL
. :: :::: .:..::: ...:. :. :..:.:::: . .. : . :: .:. .
NP_031 RVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRV
400 410 420 430 440 450
220 230 240 250 260 270
pF1KB5 KLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFL
.: . . ... :. . .. .:. : : :. ::::. . .: :
NP_031 -VQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNL
460 470 480 490 500 510
280 290 300 310 320 330
pF1KB5 EQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKA
.: . .:.:.. : ..::.:.. ..:::.
NP_031 KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDV---------------------
520 530 540 550
340 350 360 370 380 390
pF1KB5 SDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLG
.:::.:. ...:.:.:. ... :: :::.::.. :.. :.. : .. :
NP_031 ------AARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG
560 570 580 590 600 610
400 410 420 430 440 450
pF1KB5 KIEELLSGENRGPILLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSE
. . : : :.
NP_031 DLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENM
620 630 640 650 660 670
>>NP_987095 (OMIM: 613369) ATP-dependent RNA helicase DD (938 aa)
initn: 384 init1: 148 opt: 452 Z-score: 488.4 bits: 100.9 E(85289): 1.8e-20
Smith-Waterman score: 525; 27.7% identity (59.9% similar) in 401 aa overlap (9-409:255-622)
10 20 30
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAI
: :.:.: .:.. . ...:: :: ...
NP_987 TNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGV
230 240 250 260 270 280
40 50 60 70 80 90
pF1KB5 PLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQA
:.:: :.:... :.::::::::. ::: .. .: : .. .... ::.:: .:
NP_987 PVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEP--GDGPIAVIVCPTRELCQQI
290 300 310 320 330 340
100 110 120 130 140 150
pF1KB5 QSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRD
.. .... : ..: . : .. . : .:.: ..:: ::.:...:... . .:.
NP_987 HAECKRFGK--AYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-
350 360 370 380 390
160 170 180 190 200 210
pF1KB5 SLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTL
. :: :::: .:..::: ...:. :. :..:.:::: . .. : . :: .:. .
NP_987 RVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRV
400 410 420 430 440 450
220 230 240 250 260 270
pF1KB5 KLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFL
.: . . ... :. . .. .:. : : :. ::::. . .: :
NP_987 -VQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNL
460 470 480 490 500 510
280 290 300 310 320 330
pF1KB5 EQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKA
.: . .:.:.. : ..::.:.. ..:::.
NP_987 KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDV---------------------
520 530 540 550
340 350 360 370 380 390
pF1KB5 SDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLG
.:::.:. ...:.:.:. ... :: :::.::.. :.. :.. : .. :
NP_987 ------AARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG
560 570 580 590 600 610
400 410 420 430 440 450
pF1KB5 KIEELLSGENRGPILLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSE
. . : : :.
NP_987 DLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENM
620 630 640 650 660 670
>>XP_006721720 (OMIM: 613369) PREDICTED: ATP-dependent R (938 aa)
initn: 384 init1: 148 opt: 452 Z-score: 488.4 bits: 100.9 E(85289): 1.8e-20
Smith-Waterman score: 525; 27.7% identity (59.9% similar) in 401 aa overlap (9-409:255-622)
10 20 30
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAI
: :.:.: .:.. . ...:: :: ...
XP_006 TNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGV
230 240 250 260 270 280
40 50 60 70 80 90
pF1KB5 PLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQA
:.:: :.:... :.::::::::. ::: .. .: : .. .... ::.:: .:
XP_006 PVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEP--GDGPIAVIVCPTRELCQQI
290 300 310 320 330 340
100 110 120 130 140 150
pF1KB5 QSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRD
.. .... : ..: . : .. . : .:.: ..:: ::.:...:... . .:.
XP_006 HAECKRFGK--AYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-
350 360 370 380 390
160 170 180 190 200 210
pF1KB5 SLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTL
. :: :::: .:..::: ...:. :. :..:.:::: . .. : . :: .:. .
XP_006 RVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRV
400 410 420 430 440 450
220 230 240 250 260 270
pF1KB5 KLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFL
.: . . ... :. . .. .:. : : :. ::::. . .: :
XP_006 -VQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNL
460 470 480 490 500 510
280 290 300 310 320 330
pF1KB5 EQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKA
.: . .:.:.. : ..::.:.. ..:::.
XP_006 KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDV---------------------
520 530 540 550
340 350 360 370 380 390
pF1KB5 SDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLG
.:::.:. ...:.:.:. ... :: :::.::.. :.. :.. : .. :
XP_006 ------AARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG
560 570 580 590 600 610
400 410 420 430 440 450
pF1KB5 KIEELLSGENRGPILLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSE
. . : : :.
XP_006 DLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENM
620 630 640 650 660 670
>>XP_016879600 (OMIM: 613369) PREDICTED: ATP-dependent R (938 aa)
initn: 384 init1: 148 opt: 452 Z-score: 488.4 bits: 100.9 E(85289): 1.8e-20
Smith-Waterman score: 525; 27.7% identity (59.9% similar) in 401 aa overlap (9-409:255-622)
10 20 30
pF1KB5 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAI
: :.:.: .:.. . ...:: :: ...
XP_016 TNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGV
230 240 250 260 270 280
40 50 60 70 80 90
pF1KB5 PLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQA
:.:: :.:... :.::::::::. ::: .. .: : .. .... ::.:: .:
XP_016 PVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEP--GDGPIAVIVCPTRELCQQI
290 300 310 320 330 340
100 110 120 130 140 150
pF1KB5 QSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRD
.. .... : ..: . : .. . : .:.: ..:: ::.:...:... . .:.
XP_016 HAECKRFGK--AYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-
350 360 370 380 390
160 170 180 190 200 210
pF1KB5 SLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTL
. :: :::: .:..::: ...:. :. :..:.:::: . .. : . :: .:. .
XP_016 RVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRV
400 410 420 430 440 450
220 230 240 250 260 270
pF1KB5 KLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFL
.: . . ... :. . .. .:. : : :. ::::. . .: :
XP_016 -VQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNL
460 470 480 490 500 510
280 290 300 310 320 330
pF1KB5 EQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKA
.: . .:.:.. : ..::.:.. ..:::.
XP_016 KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDV---------------------
520 530 540 550
340 350 360 370 380 390
pF1KB5 SDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLG
.:::.:. ...:.:.:. ... :: :::.::.. :.. :.. : .. :
XP_016 ------AARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG
560 570 580 590 600 610
400 410 420 430 440 450
pF1KB5 KIEELLSGENRGPILLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSE
. . : : :.
XP_016 DLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENM
620 630 640 650 660 670
547 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:53:00 2016 done: Thu Nov 3 15:53:02 2016
Total Scan time: 11.220 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]