FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5046, 396 aa
  1>>>pF1KB5046 396 - 396 aa - 396 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3918+/-0.000773; mu= 16.0886+/- 0.046
 mean_var=57.4162+/-11.431, 0's: 0 Z-trim(107.3): 19  B-trim: 0 in 0/51
 Lambda= 0.169261
 statistics sampled from 9485 (9494) to 9485 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.292), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(32554)
CCDS9132.1 MVK gene_id:4598|Hs108|chr12            ( 396) 2593 641.3 4.7e-184
CCDS73522.1 MVK gene_id:4598|Hs108|chr12           ( 344) 1460 364.6  8e-101


>>CCDS9132.1 MVK gene_id:4598|Hs108|chr12                 (396 aa)
 initn: 2593 init1: 2593 opt: 2593  Z-score: 3417.9  bits: 641.3 E(32554): 4.7e-184
Smith-Waterman score: 2593; 99.7% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KB5 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLNLPNIGIKR
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS91 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
              310       320       330       340       350       360

              370       380       390      
pF1KB5 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
       ::::::::::::::::::::::::::::::::::::
CCDS91 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
              370       380       390      

>>CCDS73522.1 MVK gene_id:4598|Hs108|chr12                (344 aa)
 initn: 1460 init1: 1460 opt: 1460  Z-score: 1923.6  bits: 364.6 E(32554): 8e-101
Smith-Waterman score: 2126; 86.6% identity (86.9% similar) in 396 aa overlap (1-396:1-344)

               10        20        30        40        50        60
pF1KB5 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLNLPNIGIKR
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS73 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
       ::::                                                    ::::
CCDS73 RKQR----------------------------------------------------WTKE
                                                                   

              190       200       210       220       230       240
pF1KB5 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
      130       140       150       160       170       180        

              250       260       270       280       290       300
pF1KB5 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
      190       200       210       220       230       240        

              310       320       330       340       350       360
pF1KB5 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
      250       260       270       280       290       300        

              370       380       390      
pF1KB5 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
       ::::::::::::::::::::::::::::::::::::
CCDS73 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
      310       320       330       340    




396 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:21:46 2016 done: Fri Nov  4 03:21:47 2016
 Total Scan time:  3.040 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]