Result of FASTA (ccds) for
pF1KB5035
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5035, 192 aa
1>>>pF1KB5035 192 - 192 aa - 192 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0079+/-0.000744; mu= 5.9034+/- 0.045
mean_var=114.7843+/-22.616, 0's: 0 Z-trim(112.5): 30 B-trim: 0 in 0/51
Lambda= 0.119711
statistics sampled from 13207 (13233) to 13207 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.406), width: 16
Scan time: 2.210
The best scores are: opt bits E(32554)
CCDS7564.2 MXI1 gene_id:4601|Hs108|chr10 ( 228) 1240 224.1 4.9e-59
CCDS7563.1 MXI1 gene_id:4601|Hs108|chr10 ( 295) 1240 224.2 6.1e-59
CCDS31284.1 MXI1 gene_id:4601|Hs108|chr10 ( 182) 979 179.0 1.5e-45
CCDS1896.1 MXD1 gene_id:4084|Hs108|chr2 ( 221) 672 126.0 1.6e-29
CCDS56123.1 MXD1 gene_id:4084|Hs108|chr2 ( 211) 602 113.9 6.8e-26
CCDS3361.1 MXD4 gene_id:10608|Hs108|chr4 ( 209) 529 101.3 4.2e-22
CCDS4416.1 MXD3 gene_id:83463|Hs108|chr5 ( 206) 427 83.7 8.3e-17
CCDS47347.1 MXD3 gene_id:83463|Hs108|chr5 ( 193) 370 73.8 7.2e-14
>>CCDS7564.2 MXI1 gene_id:4601|Hs108|chr10 (228 aa)
initn: 1240 init1: 1240 opt: 1240 Z-score: 1173.4 bits: 224.1 E(32554): 4.9e-59
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:37-228)
10 20 30
pF1KB5 MPSPRLQHSKPPRRLSRAQKHSSGSSNTST
::::::::::::::::::::::::::::::
CCDS75 INVQRLLEAAEFLERRERECEHGYASSFPSMPSPRLQHSKPPRRLSRAQKHSSGSSNTST
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 QHQLENLEREQRFLKWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QHQLENLEREQRFLKWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEF
130 140 150 160 170 180
160 170 180 190
pF1KB5 SHGEVDNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
::::::::::::::::::::::::::::::::::::::::::
CCDS75 SHGEVDNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
190 200 210 220
>>CCDS7563.1 MXI1 gene_id:4601|Hs108|chr10 (295 aa)
initn: 1240 init1: 1240 opt: 1240 Z-score: 1171.7 bits: 224.2 E(32554): 6.1e-59
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:104-295)
10 20 30
pF1KB5 MPSPRLQHSKPPRRLSRAQKHSSGSSNTST
::::::::::::::::::::::::::::::
CCDS75 QILLEAASYLEQIEKENKKCEHGYASSFPSMPSPRLQHSKPPRRLSRAQKHSSGSSNTST
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB5 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB5 QHQLENLEREQRFLKWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QHQLENLEREQRFLKWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEF
200 210 220 230 240 250
160 170 180 190
pF1KB5 SHGEVDNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
::::::::::::::::::::::::::::::::::::::::::
CCDS75 SHGEVDNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
260 270 280 290
>>CCDS31284.1 MXI1 gene_id:4601|Hs108|chr10 (182 aa)
initn: 970 init1: 970 opt: 979 Z-score: 931.2 bits: 179.0 E(32554): 1.5e-45
Smith-Waterman score: 1146; 94.8% identity (94.8% similar) in 192 aa overlap (1-192:1-182)
10 20 30 40 50 60
pF1KB5 MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPL
::::::::::::::::::::::::::::::::: :::::::::::::::::
CCDS31 MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANR----------RAHLRLCLERLKVLIPL
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 GPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKWRLEQLQGPQEMERI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKWRLEQLQGPQEMERI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 RMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLPSIGSDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLPSIGSDEG
120 130 140 150 160 170
190
pF1KB5 YSSASVKLSFTS
::::::::::::
CCDS31 YSSASVKLSFTS
180
>>CCDS1896.1 MXD1 gene_id:4084|Hs108|chr2 (221 aa)
initn: 646 init1: 377 opt: 672 Z-score: 643.4 bits: 126.0 E(32554): 1.6e-29
Smith-Waterman score: 672; 61.8% identity (87.6% similar) in 170 aa overlap (18-187:43-207)
10 20 30 40
pF1KB5 MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHL
: :. . :.......::::::.::::::::
CCDS18 LEAADYLERREREAEHGYASMLPYNNKDRDALKRRNKSKKNNSSSRSTHNEMEKNRRAHL
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB5 RLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKWR
:::::.:: :.::::. .:::::.::.::: ::::::. .::. ::...:.:::: :: .
CCDS18 RLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRQ
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB5 LEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDID
::.: .:::::::::::.::.::::.::::.::::::.. :..: :..:.:: :
CCDS18 LEKLG----IERIRMDSIGSTVSSERSDSDREEIDVDVESTDYLTGDLD-WSSSSVSDSD
140 150 160 170 180
170 180 190
pF1KB5 DHSSLPSIGSDEGYSSASVKLSFTS
...:. :.::::::::.:.:
CCDS18 ERGSMQSLGSDEGYSSTSIKRIKLQDSHKACLGL
190 200 210 220
>>CCDS56123.1 MXD1 gene_id:4084|Hs108|chr2 (211 aa)
initn: 606 init1: 315 opt: 602 Z-score: 578.4 bits: 113.9 E(32554): 6.8e-26
Smith-Waterman score: 602; 62.2% identity (87.2% similar) in 156 aa overlap (32-187:48-197)
10 20 30 40 50 60
pF1KB5 PSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPLG
:.: .:. ..::::::::::.:: :.:::
CCDS56 YLERREREAEHGYASMLPYNNKDRDALKRRNKSKKNN-SSSRRAHLRLCLEKLKGLVPLG
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB5 PDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKWRLEQLQGPQEMERIR
:. .:::::.::.::: ::::::. .::. ::...:.:::: :: .::.: : .::::
CCDS56 PESSRHTTLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRQLEKL-G---IERIR
80 90 100 110 120 130
130 140 150 160 170 180
pF1KB5 MDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLPSIGSDEGY
:::::::.::.::::.::::.::::::.. :..: :..:.:: :...:. :.::::::
CCDS56 MDSIGSTVSSERSDSDREEIDVDVESTDYLTGDLD-WSSSSVSDSDERGSMQSLGSDEGY
140 150 160 170 180 190
190
pF1KB5 SSASVKLSFTS
::.:.:
CCDS56 SSTSIKRIKLQDSHKACLGL
200 210
>>CCDS3361.1 MXD4 gene_id:10608|Hs108|chr4 (209 aa)
initn: 538 init1: 346 opt: 529 Z-score: 510.3 bits: 101.3 E(32554): 4.2e-22
Smith-Waterman score: 529; 52.0% identity (76.6% similar) in 175 aa overlap (15-188:37-203)
10 20 30 40
pF1KB5 MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRR
..: . ...: . :::.::::::.::
CCDS33 LILLEAAEYLERRDREAEHGYASVLPFDGDFAREKTKAAGLVRKAPNNRSSHNELEKHRR
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB5 AHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFL
:.::: ::.:: :.::::: ::::::.::..::.::::::: .:.. :.:..:.:::
CCDS33 AKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKLEEQDRRALSIKEQLQQEHRFL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB5 KWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSIS
: :::::. : .::.: :: ::..:.: :::.: ::.:. ::. ::.:..... :
CCDS33 KRRLEQLS-VQSVERVRTDSTGSAVSTD--DSEQE---VDIEGMEFGPGELDSVGSS--S
130 140 150 160 170
170 180 190
pF1KB5 DIDDHSSLPS-IGSDEGYSSASVKLSFTS
: ::: :: : :.: :.. .:
CCDS33 DADDHYSLQSGTGGDSGFGPHCRRLGRPALS
180 190 200
>>CCDS4416.1 MXD3 gene_id:83463|Hs108|chr5 (206 aa)
initn: 381 init1: 297 opt: 427 Z-score: 415.2 bits: 83.7 E(32554): 8.3e-17
Smith-Waterman score: 427; 47.7% identity (76.2% similar) in 151 aa overlap (10-156:36-185)
10 20 30
pF1KB5 MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNEL
. : . : .:. . ... ..::.::::
CCDS44 SNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRSVHNEL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 EKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLER
:: :::.:. :::::: .::: ::.:.:::.:: .:. ::.:::. :..... : :.
CCDS44 EKRRRAQLKRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLKERLRS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 EQRFLKWRLEQLQG---PQEMERIRMDSIGST-ISSDRSDSEREEIEVDVESTEFSHGEV
.:. :. .::::.: : ::.: ::. :. .::.::::..::.:::::: :. ::.
CCDS44 KQQSLQRQLEQLRGLAGAAERERLRADSLDSSGLSSERSDSDQEELEVDVESLVFG-GEA
130 140 150 160 170 180
160 170 180 190
pF1KB5 DNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
.
CCDS44 ELLRGFVAGQEHSYSHGGGAWL
190 200
>>CCDS47347.1 MXD3 gene_id:83463|Hs108|chr5 (193 aa)
initn: 356 init1: 297 opt: 370 Z-score: 362.4 bits: 73.8 E(32554): 7.2e-14
Smith-Waterman score: 370; 45.9% identity (75.2% similar) in 133 aa overlap (10-138:36-168)
10 20 30
pF1KB5 MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNEL
. : . : .:. . ... ..::.::::
CCDS47 SNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRSVHNEL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 EKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLER
:: :::.:. :::::: .::: ::.:.:::.:: .:. ::.:::. :..... : :.
CCDS47 EKRRRAQLKRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLKERLRS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 EQRFLKWRLEQLQG---PQEMERIRMDSIGST-ISSDRSDSEREEIEVDVESTEFSHGEV
.:. :. .::::.: : ::.: ::. :. .::.::::..
CCDS47 KQQSLQRQLEQLRGLAGAAERERLRADSLDSSGLSSERSDSDQVLPNENGGTPNHRPTGR
130 140 150 160 170 180
160 170 180 190
pF1KB5 DNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
CCDS47 GNNISSHH
190
192 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:27:03 2016 done: Fri Nov 4 20:27:03 2016
Total Scan time: 2.210 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]