FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5025, 239 aa
  1>>>pF1KB5025 239 - 239 aa - 239 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2361+/-0.000797; mu= 9.5105+/- 0.049
 mean_var=166.0426+/-32.842, 0's: 0 Z-trim(115.1): 35  B-trim: 450 in 1/54
 Lambda= 0.099532
 statistics sampled from 15634 (15668) to 15634 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.481), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS2497.1 EFHD1 gene_id:80303|Hs108|chr2          ( 239) 1543 232.2 2.3e-61
CCDS155.1 EFHD2 gene_id:79180|Hs108|chr1           ( 240)  972 150.2 1.1e-36
CCDS58755.1 EFHD1 gene_id:80303|Hs108|chr2         ( 143)  867 134.9 2.7e-32
CCDS82580.1 EFHD1 gene_id:80303|Hs108|chr2         ( 127)  789 123.7 5.8e-29


>>CCDS2497.1 EFHD1 gene_id:80303|Hs108|chr2               (239 aa)
 initn: 1543 init1: 1543 opt: 1543  Z-score: 1215.0  bits: 232.2 E(32554): 2.3e-61
Smith-Waterman score: 1543; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)

               10        20        30        40        50        60
pF1KB5 MASEELACKLERRLRREEAEESGPQLAPLGAPAPEPKPEPEPPARAPTASADAELSAQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MASEELACKLERRLRREEAEESGPQLAPLGAPAPEPKPEPEPPARAPTASADAELSAQLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RRLDINEGAARPRRCRVFNPYTEFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 RRLDINEGAARPRRCRVFNPYTEFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 KLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDV
              130       140       150       160       170       180

              190       200       210       220       230         
pF1KB5 ALEGVKGAKNFFEAKVQALSSASKFEAELKAEQDERKREEEERRLRQAAFQKLKANFNT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ALEGVKGAKNFFEAKVQALSSASKFEAELKAEQDERKREEEERRLRQAAFQKLKANFNT
              190       200       210       220       230         

>>CCDS155.1 EFHD2 gene_id:79180|Hs108|chr1                (240 aa)
 initn: 1025 init1: 834 opt: 972  Z-score: 771.9  bits: 150.2 E(32554): 1.1e-36
Smith-Waterman score: 972; 66.4% identity (83.8% similar) in 241 aa overlap (1-237:1-239)

               10        20          30        40        50        
pF1KB5 MASEELACKLERRLRREEAEESG--PQLAPLGAPAPEPKPEPEPPARAPTASADAELSAQ
       ::..::: :: :::. : .: .:  :.   :.. :      :.  :.:  .::: ::::.
CCDS15 MATDELATKLSRRLQME-GEGGGETPEQPGLNGAAAAAAGAPDEAAEA-LGSADCELSAK
               10         20        30        40         50        

       60        70          80        90       100       110      
pF1KB5 LSRRLDINEGAARPRRC--RVFNPYTEFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELK
       : :: :.:.: ..:.    ::::::::: ::::. :::.:.::: :::::::::::::::
CCDS15 LLRRADLNQGIGEPQSPSRRVFNPYTEFKEFSRKQIKDMEKMFKQYDAGRDGFIDLMELK
       60        70        80        90       100       110        

        120       130       140       150       160       170      
pF1KB5 LMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLS
       ::::::::::::::::.::::::::::.:::::::::::.::::::::::::: .::.::
CCDS15 LMMEKLGAPQTHLGLKNMIKEVDEDFDSKLSFREFLLIFRKAAAGELQEDSGLCVLARLS
      120       130       140       150       160       170        

        180       190       200       210       220       230      
pF1KB5 EIDVALEGVKGAKNFFEAKVQALSSASKFEAELKAEQDERKREEEERRLRQAAFQKLKAN
       ::::. :::::::.::::::::.. .:.:: :.::::.:::.. :: . :.:::..:...
CCDS15 EIDVSSEGVKGAKSFFEAKVQAINVSSRFEEEIKAEQEERKKQAEEMKQRKAAFKELQST
      180       190       200       210       220       230        

          
pF1KB5 FNT
       :  
CCDS15 FK 
      240 

>>CCDS58755.1 EFHD1 gene_id:80303|Hs108|chr2              (143 aa)
 initn: 867 init1: 867 opt: 867  Z-score: 693.3  bits: 134.9 E(32554): 2.7e-32
Smith-Waterman score: 867; 100.0% identity (100.0% similar) in 138 aa overlap (102-239:6-143)

              80        90       100       110       120       130 
pF1KB5 PRRCRVFNPYTEFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMMEKLGAPQTHLGL
                                     ::::::::::::::::::::::::::::::
CCDS58                          MGELQYDAGRDGFIDLMELKLMMEKLGAPQTHLGL
                                        10        20        30     

             140       150       160       170       180       190 
pF1KB5 KSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVALEGVKGAKNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVALEGVKGAKNF
          40        50        60        70        80        90     

             200       210       220       230         
pF1KB5 FEAKVQALSSASKFEAELKAEQDERKREEEERRLRQAAFQKLKANFNT
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FEAKVQALSSASKFEAELKAEQDERKREEEERRLRQAAFQKLKANFNT
         100       110       120       130       140   

>>CCDS82580.1 EFHD1 gene_id:80303|Hs108|chr2              (127 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 633.4  bits: 123.7 E(32554): 5.8e-29
Smith-Waterman score: 789; 100.0% identity (100.0% similar) in 127 aa overlap (113-239:1-127)

             90       100       110       120       130       140  
pF1KB5 EFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDF
                                     ::::::::::::::::::::::::::::::
CCDS82                               MELKLMMEKLGAPQTHLGLKSMIKEVDEDF
                                             10        20        30

            150       160       170       180       190       200  
pF1KB5 DGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVALEGVKGAKNFFEAKVQALSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVALEGVKGAKNFFEAKVQALSSA
               40        50        60        70        80        90

            210       220       230         
pF1KB5 SKFEAELKAEQDERKREEEERRLRQAAFQKLKANFNT
       :::::::::::::::::::::::::::::::::::::
CCDS82 SKFEAELKAEQDERKREEEERRLRQAAFQKLKANFNT
              100       110       120       




239 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:13:49 2016 done: Thu Nov  3 22:13:49 2016
 Total Scan time:  2.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]