FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5016, 677 aa
  1>>>pF1KB5016 677 - 677 aa - 677 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0679+/-0.00118; mu= -1.4034+/- 0.071
 mean_var=296.4783+/-58.937, 0's: 0 Z-trim(111.6): 41  B-trim: 0 in 0/52
 Lambda= 0.074487
 statistics sampled from 12515 (12542) to 12515 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.385), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(32554)
CCDS13092.1 CHGB gene_id:1114|Hs108|chr20          ( 677) 4567 504.9 1.5e-142


>>CCDS13092.1 CHGB gene_id:1114|Hs108|chr20               (677 aa)
 initn: 4567 init1: 4567 opt: 4567  Z-score: 2672.5  bits: 504.9 E(32554): 1.5e-142
Smith-Waterman score: 4567; 99.3% identity (100.0% similar) in 677 aa overlap (1-677:1-677)

               10        20        30        40        50        60
pF1KB5 MQPTLLLSLLGAVGLAAVNSMPVDNRNHNEGMVTRCIIEVLSNALSKSSAPPITPECRQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MQPTLLLSLLGAVGLAAVNSMPVDNRNHNEGMVTRCIIEVLSNALSKSSAPPITPECRQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LKTSRKDVKDKETTENENTKFEVRLLRDPADATEAHESSSRGEAGAPGEEDIQGPTKADT
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS13 LKTSRKDVKDKETTENENTKFEVRLLRDPADASEAHESSSRGEAGAPGEEDIQGPTKADT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 EKWAEGGGHSRERADEPQWSLYPSDSQVSEEVKTRHSEKSQREDEEEEEGENYQKGEQGE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS13 EKWAEGGGHSRERADEPQWSLYPSDSQVSEEVKTRHSEKSQREDEEEEEGENYQKGERGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DSSEEKHLEEPGETQNAFLNERKQASAIKKEELVARSETHAAGHSQEKTHSREKSSQESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSSEEKHLEEPGETQNAFLNERKQASAIKKEELVARSETHAAGHSQEKTHSREKSSQESG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 EEAGSQENHPQESKGQPRSQEESEEGEEDATSEVDKRRTRPRHHHGRSRPDRSSQGGSLP
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EETGSQENHPQESKGQPRSQEESEEGEEDATSEVDKRRTRPRHHHGRSRPDRSSQGGSLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SEEKGHPQEESEESNVSMASLGEKRDHHSTHYRASEEEPEYGEEIKGYPGVQGPEDLEWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
CCDS13 SEEKGHPQEESEESNVSMASLGEKRDHHSTHYRASEEEPEYGEEIKGYPGVQAPEDLEWE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 RYRGRGSEEYRAPRPQSEESWDEEDKRNYPSLELDKMAHGYGEESEEERGLEPGKGHHHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS13 RYRGRGSEEYRAPRPQSEESWDEEDKRNYPSLELDKMAHGYGEESEEERGLEPGKGRHHR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 GRGGEPRAYFMSDTREEKRFLGEGHHRVQENQMDKARRHPQGAWKELDRNYLNYGEEGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GRGGEPRAYFMSDTREEKRFLGEGHHRVQENQMDKARRHPQGAWKELDRNYLNYGEEGAP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 GKWQQQGDLQDTKENREEARFQDKQYSSHHTAEKRKRLGELFNPYYDPLQWKSSHFERRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GKWQQQGDLQDTKENREEARFQDKQYSSHHTAEKRKRLGELFNPYYDPLQWKSSHFERRD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 NMNDNFLEGEEENELTLNEKNFFPEYNYDWWEKKPFSEDVNWGYEKRNLARVPKLDLKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NMNDNFLEGEEENELTLNEKNFFPEYNYDWWEKKPFSEDVNWGYEKRNLARVPKLDLKRQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 YDRVAQLDQLLHYRKKSAEFPDFYDSEEPVSTHQEAENEKDRADQTVLTEDEKKELENLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YDRVAQLDQLLHYRKKSAEFPDFYDSEEPVSTHQEAENEKDRADQTVLTEDEKKELENLA
              610       620       630       640       650       660

              670       
pF1KB5 AMDLELQKIAEKFSQRG
       :::::::::::::::::
CCDS13 AMDLELQKIAEKFSQRG
              670       




677 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:12:34 2016 done: Thu Nov  3 22:12:34 2016
 Total Scan time:  3.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]