Result of FASTA (omim) for
pF1KB5013
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5013, 203 aa
1>>>pF1KB5013 203 - 203 aa - 203 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4084+/-0.00046; mu= 12.8828+/- 0.029
mean_var=92.7134+/-18.226, 0's: 0 Z-trim(112.3): 399 B-trim: 519 in 1/52
Lambda= 0.133200
statistics sampled from 20763 (21233) to 20763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.249), width: 16
Scan time: 5.670
The best scores are: opt bits E(85289)
XP_005245627 (OMIM: 603949) PREDICTED: ras-related ( 203) 1357 270.9 9.6e-73
NP_001129134 (OMIM: 603949) ras-related protein Ra ( 203) 1357 270.9 9.6e-73
XP_005245628 (OMIM: 603949) PREDICTED: ras-related ( 203) 1357 270.9 9.6e-73
NP_003920 (OMIM: 603949) ras-related protein Rab-7 ( 203) 1357 270.9 9.6e-73
XP_005245626 (OMIM: 603949) PREDICTED: ras-related ( 203) 1357 270.9 9.6e-73
XP_016858238 (OMIM: 603949) PREDICTED: ras-related ( 179) 936 190.0 2e-48
XP_016858237 (OMIM: 603949) PREDICTED: ras-related ( 179) 936 190.0 2e-48
XP_016858239 (OMIM: 603949) PREDICTED: ras-related ( 179) 936 190.0 2e-48
NP_001129135 (OMIM: 603949) ras-related protein Ra ( 179) 936 190.0 2e-48
XP_006711669 (OMIM: 603949) PREDICTED: ras-related ( 131) 886 180.3 1.2e-45
XP_006711668 (OMIM: 603949) PREDICTED: ras-related ( 131) 886 180.3 1.2e-45
NP_001129136 (OMIM: 603949) ras-related protein Ra ( 131) 886 180.3 1.2e-45
NP_006825 (OMIM: 612906) ras-related protein Rab-3 ( 225) 713 147.2 1.9e-35
NP_071732 (OMIM: 606281) ras-related protein Rab-3 ( 211) 710 146.6 2.7e-35
XP_016872945 (OMIM: 606281) PREDICTED: ras-related ( 177) 634 131.9 5.8e-31
XP_016872944 (OMIM: 606281) PREDICTED: ras-related ( 177) 634 131.9 5.8e-31
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 433 93.4 2.7e-19
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201) 430 92.8 4e-19
NP_004242 (OMIM: 300284) ras-related protein Rab-9 ( 201) 429 92.6 4.6e-19
NP_001182257 (OMIM: 300284) ras-related protein Ra ( 201) 429 92.6 4.6e-19
XP_016885453 (OMIM: 300284) PREDICTED: ras-related ( 201) 429 92.6 4.6e-19
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 425 91.8 7.8e-19
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205) 422 91.3 1.2e-18
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220) 411 89.2 5.4e-18
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220) 411 89.2 5.4e-18
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 407 88.4 8.8e-18
NP_001265596 (OMIM: 201000,606144) ras-related pro ( 237) 404 87.9 1.5e-17
NP_001265597 (OMIM: 201000,606144) ras-related pro ( 237) 404 87.9 1.5e-17
NP_001265595 (OMIM: 201000,606144) ras-related pro ( 237) 404 87.9 1.5e-17
NP_899050 (OMIM: 201000,606144) ras-related protei ( 237) 404 87.9 1.5e-17
NP_057361 (OMIM: 201000,606144) ras-related protei ( 237) 404 87.9 1.5e-17
NP_001020471 (OMIM: 616448) ras-related protein Ra ( 244) 404 87.9 1.5e-17
NP_004628 (OMIM: 600882,602298) ras-related protei ( 207) 403 87.6 1.5e-17
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207) 402 87.4 1.7e-17
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225) 399 86.9 2.7e-17
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227) 399 86.9 2.7e-17
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 397 86.5 3.3e-17
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219) 397 86.5 3.5e-17
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216) 395 86.1 4.5e-17
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215) 390 85.1 8.7e-17
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256) 386 84.4 1.7e-16
NP_057454 (OMIM: 300285) ras-related protein Rab-9 ( 201) 383 83.8 2.1e-16
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218) 382 83.6 2.6e-16
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219) 380 83.2 3.4e-16
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219) 380 83.2 3.4e-16
NP_002860 (OMIM: 179513) ras-related protein Rab-6 ( 208) 379 83.0 3.7e-16
XP_011523393 (OMIM: 604037) PREDICTED: ras-related ( 216) 377 82.6 5e-16
NP_958842 (OMIM: 604037) ras-related protein Rab-5 ( 216) 377 82.6 5e-16
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216) 377 82.6 5e-16
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216) 377 82.6 5e-16
>>XP_005245627 (OMIM: 603949) PREDICTED: ras-related pro (203 aa)
initn: 1357 init1: 1357 opt: 1357 Z-score: 1426.9 bits: 270.9 E(85289): 9.6e-73
Smith-Waterman score: 1357; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)
10 20 30 40 50 60
pF1KB5 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
130 140 150 160 170 180
190 200
pF1KB5 IMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::
XP_005 IMSLSTQGDYINLQTKSSSWSCC
190 200
>>NP_001129134 (OMIM: 603949) ras-related protein Rab-7L (203 aa)
initn: 1357 init1: 1357 opt: 1357 Z-score: 1426.9 bits: 270.9 E(85289): 9.6e-73
Smith-Waterman score: 1357; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)
10 20 30 40 50 60
pF1KB5 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
130 140 150 160 170 180
190 200
pF1KB5 IMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::
NP_001 IMSLSTQGDYINLQTKSSSWSCC
190 200
>>XP_005245628 (OMIM: 603949) PREDICTED: ras-related pro (203 aa)
initn: 1357 init1: 1357 opt: 1357 Z-score: 1426.9 bits: 270.9 E(85289): 9.6e-73
Smith-Waterman score: 1357; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)
10 20 30 40 50 60
pF1KB5 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
130 140 150 160 170 180
190 200
pF1KB5 IMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::
XP_005 IMSLSTQGDYINLQTKSSSWSCC
190 200
>>NP_003920 (OMIM: 603949) ras-related protein Rab-7L1 i (203 aa)
initn: 1357 init1: 1357 opt: 1357 Z-score: 1426.9 bits: 270.9 E(85289): 9.6e-73
Smith-Waterman score: 1357; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)
10 20 30 40 50 60
pF1KB5 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
130 140 150 160 170 180
190 200
pF1KB5 IMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::
NP_003 IMSLSTQGDYINLQTKSSSWSCC
190 200
>>XP_005245626 (OMIM: 603949) PREDICTED: ras-related pro (203 aa)
initn: 1357 init1: 1357 opt: 1357 Z-score: 1426.9 bits: 270.9 E(85289): 9.6e-73
Smith-Waterman score: 1357; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)
10 20 30 40 50 60
pF1KB5 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
130 140 150 160 170 180
190 200
pF1KB5 IMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::
XP_005 IMSLSTQGDYINLQTKSSSWSCC
190 200
>>XP_016858238 (OMIM: 603949) PREDICTED: ras-related pro (179 aa)
initn: 936 init1: 936 opt: 936 Z-score: 990.4 bits: 190.0 E(85289): 2e-48
Smith-Waterman score: 1136; 88.2% identity (88.2% similar) in 203 aa overlap (1-203:1-179)
10 20 30 40 50 60
pF1KB5 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
:::::::::::::::::::::::::::::::::::::::::
XP_016 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------
10 20 30 40
70 80 90 100 110 120
pF1KB5 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -----GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
50 60 70 80 90
130 140 150 160 170 180
pF1KB5 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
100 110 120 130 140 150
190 200
pF1KB5 IMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::
XP_016 IMSLSTQGDYINLQTKSSSWSCC
160 170
>>XP_016858237 (OMIM: 603949) PREDICTED: ras-related pro (179 aa)
initn: 936 init1: 936 opt: 936 Z-score: 990.4 bits: 190.0 E(85289): 2e-48
Smith-Waterman score: 1136; 88.2% identity (88.2% similar) in 203 aa overlap (1-203:1-179)
10 20 30 40 50 60
pF1KB5 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
:::::::::::::::::::::::::::::::::::::::::
XP_016 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------
10 20 30 40
70 80 90 100 110 120
pF1KB5 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -----GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
50 60 70 80 90
130 140 150 160 170 180
pF1KB5 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
100 110 120 130 140 150
190 200
pF1KB5 IMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::
XP_016 IMSLSTQGDYINLQTKSSSWSCC
160 170
>>XP_016858239 (OMIM: 603949) PREDICTED: ras-related pro (179 aa)
initn: 936 init1: 936 opt: 936 Z-score: 990.4 bits: 190.0 E(85289): 2e-48
Smith-Waterman score: 1136; 88.2% identity (88.2% similar) in 203 aa overlap (1-203:1-179)
10 20 30 40 50 60
pF1KB5 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
:::::::::::::::::::::::::::::::::::::::::
XP_016 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------
10 20 30 40
70 80 90 100 110 120
pF1KB5 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -----GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
50 60 70 80 90
130 140 150 160 170 180
pF1KB5 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
100 110 120 130 140 150
190 200
pF1KB5 IMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::
XP_016 IMSLSTQGDYINLQTKSSSWSCC
160 170
>>NP_001129135 (OMIM: 603949) ras-related protein Rab-7L (179 aa)
initn: 936 init1: 936 opt: 936 Z-score: 990.4 bits: 190.0 E(85289): 2e-48
Smith-Waterman score: 1136; 88.2% identity (88.2% similar) in 203 aa overlap (1-203:1-179)
10 20 30 40 50 60
pF1KB5 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
:::::::::::::::::::::::::::::::::::::::::
NP_001 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG-------------------
10 20 30 40
70 80 90 100 110 120
pF1KB5 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -----GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
50 60 70 80 90
130 140 150 160 170 180
pF1KB5 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
100 110 120 130 140 150
190 200
pF1KB5 IMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::
NP_001 IMSLSTQGDYINLQTKSSSWSCC
160 170
>>XP_006711669 (OMIM: 603949) PREDICTED: ras-related pro (131 aa)
initn: 886 init1: 886 opt: 886 Z-score: 940.2 bits: 180.3 E(85289): 1.2e-45
Smith-Waterman score: 886; 100.0% identity (100.0% similar) in 131 aa overlap (73-203:1-131)
50 60 70 80 90 100
pF1KB5 DFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRW
::::::::::::::::::::::::::::::
XP_006 MTRLYYRDASACVIMFDVTNATTFSNSQRW
10 20 30
110 120 130 140 150 160
pF1KB5 KQDLDSKLTLPNGEPVPCLLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KQDLDSKLTLPNGEPVPCLLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNI
40 50 60 70 80 90
170 180 190 200
pF1KB5 NEAMRVLIEKMMRNSTEDIMSLSTQGDYINLQTKSSSWSCC
:::::::::::::::::::::::::::::::::::::::::
XP_006 NEAMRVLIEKMMRNSTEDIMSLSTQGDYINLQTKSSSWSCC
100 110 120 130
203 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:16:28 2016 done: Sat Nov 5 06:16:29 2016
Total Scan time: 5.670 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]