Result of FASTA (ccds) for
pF1KB5012
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5012, 543 aa
1>>>pF1KB5012 543 - 543 aa - 543 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8844+/-0.00087; mu= 3.5366+/- 0.053
mean_var=172.4292+/-35.530, 0's: 0 Z-trim(112.9): 40 B-trim: 224 in 1/53
Lambda= 0.097672
statistics sampled from 13531 (13566) to 13531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.417), width: 16
Scan time: 3.900
The best scores are: opt bits E(32554)
CCDS8058.1 STIP1 gene_id:10963|Hs108|chr11 ( 543) 3622 522.3 5.8e-148
CCDS60827.1 STIP1 gene_id:10963|Hs108|chr11 ( 590) 3604 519.7 3.6e-147
CCDS60828.1 STIP1 gene_id:10963|Hs108|chr11 ( 519) 2977 431.4 1.3e-120
>>CCDS8058.1 STIP1 gene_id:10963|Hs108|chr11 (543 aa)
initn: 3622 init1: 3622 opt: 3622 Z-score: 2769.8 bits: 522.3 E(32554): 5.8e-148
Smith-Waterman score: 3622; 100.0% identity (100.0% similar) in 543 aa overlap (1-543:1-543)
10 20 30 40 50 60
pF1KB5 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 ERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 VLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
490 500 510 520 530 540
pF1KB5 AIR
:::
CCDS80 AIR
>>CCDS60827.1 STIP1 gene_id:10963|Hs108|chr11 (590 aa)
initn: 3604 init1: 3604 opt: 3604 Z-score: 2755.6 bits: 519.7 E(32554): 3.6e-147
Smith-Waterman score: 3604; 99.4% identity (99.8% similar) in 543 aa overlap (1-543:48-590)
10 20 30
pF1KB5 MEQVNELKEKGNKALSVGNIDDALQCYSEA
.. :::::::::::::::::::::::::::
CCDS60 TNGRGQRGYDWQCKRPIRVAEVRSSLHSWSLRWVNELKEKGNKALSVGNIDDALQCYSEA
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB5 IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB5 AKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMNPFNMPNLYQKLESDPRTRTLLSDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 AKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMNPFNMPNLYQKLESDPRTRTLLSDP
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB5 TYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPKKETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPKKETK
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB5 PEPMEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PEPMEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB5 EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB5 RTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN
380 390 400 410 420 430
400 410 420 430 440 450
pF1KB5 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV
440 450 460 470 480 490
460 470 480 490 500 510
pF1KB5 YQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 YQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQ
500 510 520 530 540 550
520 530 540
pF1KB5 MQKDPQALSEHLKNPVIAQKIQKLMDVGLIAIR
:::::::::::::::::::::::::::::::::
CCDS60 MQKDPQALSEHLKNPVIAQKIQKLMDVGLIAIR
560 570 580 590
>>CCDS60828.1 STIP1 gene_id:10963|Hs108|chr11 (519 aa)
initn: 2976 init1: 2976 opt: 2977 Z-score: 2278.9 bits: 431.4 E(32554): 1.3e-120
Smith-Waterman score: 3414; 95.6% identity (95.6% similar) in 543 aa overlap (1-543:1-519)
10 20 30 40 50 60
pF1KB5 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA
:::::::::::::: ::::::::::::::::::::::
CCDS60 GCKTVDLKPDWGKG------------------------LKHEANNPQLKEGLQNMEARLA
70 80 90
130 140 150 160 170 180
pF1KB5 ERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 VLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB5 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB5 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB5 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB5 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB5 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
460 470 480 490 500 510
pF1KB5 AIR
:::
CCDS60 AIR
543 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:44:42 2016 done: Thu Nov 3 15:44:42 2016
Total Scan time: 3.900 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]