FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5011, 417 aa
  1>>>pF1KB5011 417 - 417 aa - 417 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0823+/-0.00115; mu= 12.4639+/- 0.068
 mean_var=65.9727+/-13.565, 0's: 0 Z-trim(101.7): 19  B-trim: 331 in 1/46
 Lambda= 0.157904
 statistics sampled from 6608 (6612) to 6608 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.566), E-opt: 0.2 (0.203), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS5985.1 FDFT1 gene_id:2222|Hs108|chr8           ( 417) 2776 641.7 3.7e-184
CCDS75696.1 FDFT1 gene_id:2222|Hs108|chr8          ( 353) 2349 544.5 6.1e-155
CCDS75697.1 FDFT1 gene_id:2222|Hs108|chr8          ( 332) 2212 513.2 1.4e-145


>>CCDS5985.1 FDFT1 gene_id:2222|Hs108|chr8                (417 aa)
 initn: 2776 init1: 2776 opt: 2776  Z-score: 3419.6  bits: 641.7 E(32554): 3.7e-184
Smith-Waterman score: 2776; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KB5 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 KKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTR
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KB5 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQVTEDYVQTGEH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQVTEDYVQTGEH
              370       380       390       400       410       

>>CCDS75696.1 FDFT1 gene_id:2222|Hs108|chr8               (353 aa)
 initn: 2349 init1: 2349 opt: 2349  Z-score: 2895.2  bits: 544.5 E(32554): 6.1e-155
Smith-Waterman score: 2349; 100.0% identity (100.0% similar) in 353 aa overlap (65-417:1-353)

           40        50        60        70        80        90    
pF1KB5 SLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKV
                                     ::::::::::::::::::::::::::::::
CCDS75                               MRNAVCIFYLVLRALDTLEDDMTISVEKKV
                                             10        20        30

          100       110       120       130       140       150    
pF1KB5 PLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGM
               40        50        60        70        80        90

          160       170       180       190       200       210    
pF1KB5 AEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKT
              100       110       120       130       140       150

          220       230       240       250       260       270    
pF1KB5 NIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVI
              160       170       180       190       200       210

          280       290       300       310       320       330    
pF1KB5 TYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAV
              220       230       240       250       260       270

          340       350       360       370       380       390    
pF1KB5 KAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLA
              280       290       300       310       320       330

          400       410       
pF1KB5 ALSWQYLTTLSQVTEDYVQTGEH
       :::::::::::::::::::::::
CCDS75 ALSWQYLTTLSQVTEDYVQTGEH
              340       350   

>>CCDS75697.1 FDFT1 gene_id:2222|Hs108|chr8               (332 aa)
 initn: 2212 init1: 2212 opt: 2212  Z-score: 2727.0  bits: 513.2 E(32554): 1.4e-145
Smith-Waterman score: 2212; 100.0% identity (100.0% similar) in 332 aa overlap (86-417:1-332)

          60        70        80        90       100       110     
pF1KB5 AVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESK
                                     ::::::::::::::::::::::::::::::
CCDS75                               MTISVEKKVPLLHNFHSFLYQPDWRFMESK
                                             10        20        30

         120       130       140       150       160       170     
pF1KB5 EKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYV
               40        50        60        70        80        90

         180       190       200       210       220       230     
pF1KB5 AGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEV
              100       110       120       130       140       150

         240       250       260       270       280       290     
pF1KB5 WSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVM
              160       170       180       190       200       210

         300       310       320       330       340       350     
pF1KB5 AIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPS
              220       230       240       250       260       270

         360       370       380       390       400       410     
pF1KB5 SSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQVTEDYVQTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQVTEDYVQTG
              280       290       300       310       320       330

         
pF1KB5 EH
       ::
CCDS75 EH
         




417 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:15:58 2016 done: Sat Nov  5 06:15:59 2016
 Total Scan time:  2.670 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]