FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4987, 471 aa
  1>>>pF1KB4987 471 - 471 aa - 471 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9834+/-0.000908; mu= 14.7342+/- 0.055
 mean_var=73.0495+/-14.525, 0's: 0 Z-trim(106.5): 10  B-trim: 0 in 0/51
 Lambda= 0.150060
 statistics sampled from 9015 (9022) to 9015 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.277), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS9960.1 WARS gene_id:7453|Hs108|chr14           ( 471) 3153 691.9 3.8e-199
CCDS9961.1 WARS gene_id:7453|Hs108|chr14           ( 430) 2904 638.0  6e-183


>>CCDS9960.1 WARS gene_id:7453|Hs108|chr14                (471 aa)
 initn: 3153 init1: 3153 opt: 3153  Z-score: 3688.7  bits: 691.9 E(32554): 3.8e-199
Smith-Waterman score: 3153; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471)

               10        20        30        40        50        60
pF1KB4 MPNSEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MPNSEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 ERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 ERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 MGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 TDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 TDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 LTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDY
              370       380       390       400       410       420

              430       440       450       460       470 
pF1KB4 TSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 TSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ
              430       440       450       460       470 

>>CCDS9961.1 WARS gene_id:7453|Hs108|chr14                (430 aa)
 initn: 2904 init1: 2904 opt: 2904  Z-score: 3398.0  bits: 638.0 E(32554): 6e-183
Smith-Waterman score: 2904; 100.0% identity (100.0% similar) in 430 aa overlap (42-471:1-430)

              20        30        40        50        60        70 
pF1KB4 LFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPGNPAPTS
                                     ::::::::::::::::::::::::::::::
CCDS99                               MLVSLKMSYKAAAGEDYKADCPPGNPAPTS
                                             10        20        30

              80        90       100       110       120       130 
pF1KB4 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF
               40        50        60        70        80        90

             140       150       160       170       180       190 
pF1KB4 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL
              100       110       120       130       140       150

             200       210       220       230       240       250 
pF1KB4 VIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV
              160       170       180       190       200       210

             260       270       280       290       300       310 
pF1KB4 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI
              220       230       240       250       260       270

             320       330       340       350       360       370 
pF1KB4 DQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTK
              280       290       300       310       320       330

             380       390       400       410       420       430 
pF1KB4 VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELK
              340       350       360       370       380       390

             440       450       460       470 
pF1KB4 KALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ
       ::::::::::::::::::::::::::::::::::::::::
CCDS99 KALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ
              400       410       420       430




471 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:10:43 2016 done: Sat Nov  5 06:10:44 2016
 Total Scan time:  3.050 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]