FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4977, 400 aa
  1>>>pF1KB4977 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0609+/-0.000985; mu= 13.7986+/- 0.059
 mean_var=103.7718+/-21.298, 0's: 0 Z-trim(106.9): 100  B-trim: 61 in 2/50
 Lambda= 0.125903
 statistics sampled from 9144 (9249) to 9144 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.284), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS8273.1 EED gene_id:8726|Hs108|chr11            ( 441) 2783 516.4 2.1e-146
CCDS76463.1 EED gene_id:8726|Hs108|chr11           ( 466) 2224 414.9  8e-116
CCDS81612.1 EED gene_id:8726|Hs108|chr11           ( 361) 1655 311.4 8.5e-85


>>CCDS8273.1 EED gene_id:8726|Hs108|chr11                 (441 aa)
 initn: 2783 init1: 2783 opt: 2783  Z-score: 2742.0  bits: 516.4 E(32554): 2.1e-146
Smith-Waterman score: 2783; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
              310       320       330       340       350       360

              370       380       390       400                    
pF1KB4 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK                    
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS82 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
              370       380       390       400       410       420

CCDS82 DSSILIAVCDDASIWRWDRLR
              430       440 

>>CCDS76463.1 EED gene_id:8726|Hs108|chr11                (466 aa)
 initn: 2223 init1: 2223 opt: 2224  Z-score: 2192.9  bits: 414.9 E(32554): 8e-116
Smith-Waterman score: 2723; 94.1% identity (94.1% similar) in 425 aa overlap (1-400:1-425)

               10        20        30        40        50        60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
              250       260       270       280       290       300

              310       320                                330     
pF1KB4 TRDIHRNYVDCVRWLGDLILSKS-------------------------CENAIVCWKPGK
       :::::::::::::::::::::::                         ::::::::::::
CCDS76 TRDIHRNYVDCVRWLGDLILSKSGRAILHSHQQCMRDPVSPNLRQHLSCENAIVCWKPGK
              310       320       330       340       350       360

         340       350       360       370       380       390     
pF1KB4 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED
              370       380       390       400       410       420

         400                                         
pF1KB4 PHKAK                                         
       :::::                                         
CCDS76 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR
              430       440       450       460      

>>CCDS81612.1 EED gene_id:8726|Hs108|chr11                (361 aa)
 initn: 1655 init1: 1655 opt: 1655  Z-score: 1635.9  bits: 311.4 E(32554): 8.5e-85
Smith-Waterman score: 2050; 80.0% identity (80.0% similar) in 400 aa overlap (1-400:1-320)

               10        20        30        40        50        60
pF1KB4 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
       ::                                                          
CCDS81 SA----------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KB4 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
                             ::::::::::::::::::::::::::::::::::::::
CCDS81 ----------------------SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
                                  250       260       270       280

              370       380       390       400                    
pF1KB4 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK                    
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS81 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
              290       300       310       320       330       340

CCDS81 DSSILIAVCDDASIWRWDRLR
              350       360 




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:19:57 2016 done: Fri Nov  4 03:19:57 2016
 Total Scan time:  2.060 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]