Result of FASTA (ccds) for
pF1KB4878
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4878, 511 aa
1>>>pF1KB4878 511 - 511 aa - 511 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6068+/-0.00112; mu= 15.9875+/- 0.067
mean_var=60.5093+/-12.713, 0's: 0 Z-trim(101.8): 25 B-trim: 378 in 1/46
Lambda= 0.164878
statistics sampled from 6648 (6665) to 6648 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.566), E-opt: 0.2 (0.205), width: 16
Scan time: 3.000
The best scores are: opt bits E(32554)
CCDS13742.1 CECR1 gene_id:51816|Hs108|chr22 ( 511) 3421 822.7 0
CCDS63395.1 CECR1 gene_id:51816|Hs108|chr22 ( 469) 3154 759.2 0
CCDS74809.1 CECR1 gene_id:51816|Hs108|chr22 ( 391) 2653 640.0 1.4e-183
CCDS13743.1 CECR1 gene_id:51816|Hs108|chr22 ( 270) 1735 421.6 5.4e-118
>>CCDS13742.1 CECR1 gene_id:51816|Hs108|chr22 (511 aa)
initn: 3421 init1: 3421 opt: 3421 Z-score: 4394.7 bits: 822.7 E(32554): 0
Smith-Waterman score: 3421; 100.0% identity (100.0% similar) in 511 aa overlap (1-511:1-511)
10 20 30 40 50 60
pF1KB4 MLVDGPSERPALCFLLLAVAMSFFGSALSIDETRAHLLLKEKMMRLGGRLVLNTKEELAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLVDGPSERPALCFLLLAVAMSFFGSALSIDETRAHLLLKEKMMRLGGRLVLNTKEELAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ERLMTLKIAEMKEAMRTLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ERLMTLKIAEMKEAMRTLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 MDWLVRNVTYRPHCHICFTPRGIMQFRFAHPTPRPSEKCSKWILLEDYRKRVQNVTEFDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDWLVRNVTYRPHCHICFTPRGIMQFRFAHPTPRPSEKCSKWILLEDYRKRVQNVTEFDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 SLLRNFTLVTQHPEVIYTNQNVVWSKFETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLLRNFTLVTQHPEVIYTNQNVVWSKFETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 LYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 IAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGET
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 DWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 LRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSI
430 440 450 460 470 480
490 500 510
pF1KB4 KYSTLLESEKNTFMEIWKKRWDKFIADVATK
:::::::::::::::::::::::::::::::
CCDS13 KYSTLLESEKNTFMEIWKKRWDKFIADVATK
490 500 510
>>CCDS63395.1 CECR1 gene_id:51816|Hs108|chr22 (469 aa)
initn: 3154 init1: 3154 opt: 3154 Z-score: 4052.1 bits: 759.2 E(32554): 0
Smith-Waterman score: 3154; 100.0% identity (100.0% similar) in 469 aa overlap (43-511:1-469)
20 30 40 50 60 70
pF1KB4 CFLLLAVAMSFFGSALSIDETRAHLLLKEKMMRLGGRLVLNTKEELANERLMTLKIAEMK
::::::::::::::::::::::::::::::
CCDS63 MMRLGGRLVLNTKEELANERLMTLKIAEMK
10 20 30
80 90 100 110 120 130
pF1KB4 EAMRTLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVTMDWLVRNVTYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EAMRTLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVTMDWLVRNVTYRP
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB4 HCHICFTPRGIMQFRFAHPTPRPSEKCSKWILLEDYRKRVQNVTEFDDSLLRNFTLVTQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 HCHICFTPRGIMQFRFAHPTPRPSEKCSKWILLEDYRKRVQNVTEFDDSLLRNFTLVTQH
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB4 PEVIYTNQNVVWSKFETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNVLYMEIRARLLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PEVIYTNQNVVWSKFETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNVLYMEIRARLLPV
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB4 YELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGLR
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB4 IKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNIL
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB4 DALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMAT
340 350 360 370 380 390
440 450 460 470 480 490
pF1KB4 GHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKNT
400 410 420 430 440 450
500 510
pF1KB4 FMEIWKKRWDKFIADVATK
:::::::::::::::::::
CCDS63 FMEIWKKRWDKFIADVATK
460
>>CCDS74809.1 CECR1 gene_id:51816|Hs108|chr22 (391 aa)
initn: 2653 init1: 2653 opt: 2653 Z-score: 3409.4 bits: 640.0 E(32554): 1.4e-183
Smith-Waterman score: 2653; 100.0% identity (100.0% similar) in 391 aa overlap (121-511:1-391)
100 110 120 130 140 150
pF1KB4 HLIERSQVFNILRMMPKGAALHLHDIGIVTMDWLVRNVTYRPHCHICFTPRGIMQFRFAH
::::::::::::::::::::::::::::::
CCDS74 MDWLVRNVTYRPHCHICFTPRGIMQFRFAH
10 20 30
160 170 180 190 200 210
pF1KB4 PTPRPSEKCSKWILLEDYRKRVQNVTEFDDSLLRNFTLVTQHPEVIYTNQNVVWSKFETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PTPRPSEKCSKWILLEDYRKRVQNVTEFDDSLLRNFTLVTQHPEVIYTNQNVVWSKFETI
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB4 FFTISGLIHYAPVFRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FFTISGLIHYAPVFRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQ
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB4 EVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGLRIKFPTVVAGFDLVGHEDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGLRIKFPTVVAGFDLVGHEDT
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB4 GHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDALMLNTTRIGHGFALSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDALMLNTTRIGHGFALSK
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB4 HPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAKG
280 290 300 310 320 330
460 470 480 490 500 510
pF1KB4 LSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKNTFMEIWKKRWDKFIADVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKNTFMEIWKKRWDKFIADVAT
340 350 360 370 380 390
pF1KB4 K
:
CCDS74 K
>>CCDS13743.1 CECR1 gene_id:51816|Hs108|chr22 (270 aa)
initn: 1735 init1: 1735 opt: 1735 Z-score: 2231.9 bits: 421.6 E(32554): 5.4e-118
Smith-Waterman score: 1735; 100.0% identity (100.0% similar) in 260 aa overlap (252-511:11-270)
230 240 250 260 270 280
pF1KB4 PVFRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHP
::::::::::::::::::::::::::::::
CCDS13 MDSLEWNWALVYELSGEHHDEEWSVKTYQEVAQKFVETHP
10 20 30 40
290 300 310 320 330 340
pF1KB4 EFIGIKIIYSDHRSKDVAVIAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EFIGIKIIYSDHRSKDVAVIAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEAL
50 60 70 80 90 100
350 360 370 380 390 400
pF1KB4 MIPAKDGVKLPYFFHAGETDWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MIPAKDGVKLPYFFHAGETDWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKK
110 120 130 140 150 160
410 420 430 440 450 460
pF1KB4 DIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMG
170 180 190 200 210 220
470 480 490 500 510
pF1KB4 IGGMKADLRTLKQLAMNSIKYSTLLESEKNTFMEIWKKRWDKFIADVATK
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IGGMKADLRTLKQLAMNSIKYSTLLESEKNTFMEIWKKRWDKFIADVATK
230 240 250 260 270
511 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:16:45 2016 done: Fri Nov 4 03:16:45 2016
Total Scan time: 3.000 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]