FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4699, 370 aa
  1>>>pF1KB4699 370 - 370 aa - 370 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4601+/-0.000948; mu= 15.6521+/- 0.056
 mean_var=153.7949+/-57.006, 0's: 0 Z-trim(106.6): 228  B-trim: 1157 in 2/48
 Lambda= 0.103420
 statistics sampled from 8589 (9060) to 8589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS5758.1 GPR85 gene_id:54329|Hs108|chr7          ( 370) 2519 388.4 5.2e-108
CCDS14349.1 GPR173 gene_id:54328|Hs108|chrX        ( 373) 1687 264.3 1.2e-70
CCDS2915.1 GPR27 gene_id:2850|Hs108|chr3           ( 375) 1322 209.8 3.1e-54


>>CCDS5758.1 GPR85 gene_id:54329|Hs108|chr7               (370 aa)
 initn: 2519 init1: 2519 opt: 2519  Z-score: 2052.5  bits: 388.4 E(32554): 5.2e-108
Smith-Waterman score: 2519; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)

               10        20        30        40        50        60
pF1KB4 MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 DLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 LAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 LAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 ANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 ANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 YLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 YLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKS
              310       320       330       340       350       360

              370
pF1KB4 RLPREPYCVI
       ::::::::::
CCDS57 RLPREPYCVI
              370

>>CCDS14349.1 GPR173 gene_id:54328|Hs108|chrX             (373 aa)
 initn: 1722 init1: 1293 opt: 1687  Z-score: 1381.6  bits: 264.3 E(32554): 1.2e-70
Smith-Waterman score: 1687; 62.4% identity (86.9% similar) in 375 aa overlap (1-370:1-373)

               10          20        30        40        50        
pF1KB4 MANYSHAADNILQNLSP--LTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYF
       ::: .   ...   :::   .:..::. ::.:. ::..:: ..:.:..:...::.:::::
CCDS14 MANTTGEPEEVSGALSPPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYF
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB4 LLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVT
       ::::: .: .:::.:::::. ::..::.::...:.::..::..:: :::.::::::::::
CCDS14 LLDLCLADGIRSAVCFPFVLASVRHGSSWTFSALSCKIVAFMAVLFCFHAAFMLFCISVT
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB4 RYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRS
       ::.::::::::.::.:.::: :::::.::::::::::::.:::::.:::::::: :.:: 
CCDS14 RYMAIAHHRFYAKRMTLWTCAAVICMAWTLSVAMAFPPVFDVGTYKFIREEDQCIFEHRY
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KB4 FRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQ
       :.:::.:::::.::... ::. :: ::..: . .:::::::.: :.:::::::::::.::
CCDS14 FKANDTLGFMLMLAVLMAATHAVYGKLLLFEYRHRKMKPVQMVPAISQNWTFHGPGATGQ
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KB4 AAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLW
       :::::.::::::: ::::::::::.....:: :: .:: : ::...:::: .:.::: ::
CCDS14 AAANWIAGFGRGPMPPTLLGIRQNGHAASRR-LLGMDEVKGEKQLGRMFYAITLLFLLLW
              250       260       270        280       290         

      300       310       320       330       340       350        
pF1KB4 GPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCR
       .::.::::::::... .::  .:..:::::::::..::.::.. :..:..:. :    : 
CCDS14 SPYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKCLRTHA-PCW
     300       310       320       330       340       350         

      360          370
pF1KB4 KSR---LPREPYCVI
        .     :::::::.
CCDS14 GTGGAPAPREPYCVM
      360       370   

>>CCDS2915.1 GPR27 gene_id:2850|Hs108|chr3                (375 aa)
 initn: 1263 init1: 802 opt: 1322  Z-score: 1087.3  bits: 209.8 E(32554): 3.1e-54
Smith-Waterman score: 1322; 55.2% identity (82.3% similar) in 344 aa overlap (22-361:20-360)

               10        20        30        40        50        60
pF1KB4 MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLL
                            :::..:.... ::..::.:...:.:....:::::::.::
CCDS29   MANASEPGGSGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLL
                 10        20        30        40        50        

               70        80           90       100       110       
pF1KB4 DLCCSDILRSAICFPFVFNSVKNGSTWTY---GTLTCKVIAFLGVLSCFHTAFMLFCISV
       ::: .: ::.  :.: :. ... ... .    :.: ::..:::..: :::.::.:. ..:
CCDS29 DLCLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGVGV
       60        70        80        90       100       110        

       120       130       140        150       160       170      
pF1KB4 TRYLAIAHHRFYTKRLTFWTCLAV-ICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQH
       ::::::::::::..::. : : :. .: .:.:..: ::::::: :  .   :.  :....
CCDS29 TRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGDD---EDAPCALEQ
      120       130       140       150       160          170     

        180       190       200       210       220       230      
pF1KB4 RSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGAS
       :   :  .:::.::::... ::.::::.:.::.::::::.:...: :::..::::::::.
CCDS29 RPDGAPGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGAT
         180       190       200       210       220       230     

        240       250       260       270       280       290      
pF1KB4 GQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLT
       ::::::: ::::::::::.:.:::  .   : ::::::.::: :::. .::: .:.::: 
CCDS29 GQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLFLL
         240       250       260       270       280       290     

        300       310       320       330       340       350      
pF1KB4 LWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLY
       :::::.:: : ::..:  .:: ..:::.::..:::::::: ::.. ::::: :: . .  
CCDS29 LWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPC
         300       310       320       330       340       350     

        360       370      
pF1KB4 CRKSRLPREPYCVI      
       :.. :               
CCDS29 CQSPRTTQATHPCDLKGIGL
         360       370     




370 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:24:09 2016 done: Thu Nov  3 15:24:09 2016
 Total Scan time:  2.770 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]