Result of FASTA (omim) for
pF1KB4666
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4666, 68 aa
1>>>pF1KB4666 68 - 68 aa - 68 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4705+/-0.000259; mu= 10.9353+/- 0.016
mean_var=46.8440+/- 9.270, 0's: 0 Z-trim(120.0): 30 B-trim: 75 in 1/54
Lambda= 0.187390
statistics sampled from 34636 (34667) to 34636 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.406), width: 16
Scan time: 3.900
The best scores are: opt bits E(85289)
NP_001017998 (OMIM: 604389) guanine nucleotide-bin ( 68) 436 124.1 1.7e-29
NP_001185593 (OMIM: 604389) guanine nucleotide-bin ( 68) 436 124.1 1.7e-29
NP_005265 (OMIM: 600874) guanine nucleotide-bindin ( 68) 264 77.6 1.7e-15
NP_443079 (OMIM: 604430) guanine nucleotide-bindin ( 68) 249 73.6 2.8e-14
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc ( 68) 249 73.6 2.8e-14
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 228 67.9 1.5e-12
NP_001230702 (OMIM: 606981) guanine nucleotide-bin ( 71) 228 67.9 1.5e-12
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 228 67.9 1.5e-12
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 228 67.9 1.5e-12
NP_001230703 (OMIM: 606981) guanine nucleotide-bin ( 71) 228 67.9 1.5e-12
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 228 67.9 1.5e-12
NP_444292 (OMIM: 606981) guanine nucleotide-bindin ( 71) 228 67.9 1.5e-12
NP_061329 (OMIM: 615405) guanine nucleotide-bindin ( 72) 222 66.3 4.7e-12
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 222 66.3 4.7e-12
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 222 66.3 4.7e-12
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 222 66.3 4.7e-12
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc ( 75) 218 65.2 1e-11
NP_036334 (OMIM: 608941) guanine nucleotide-bindin ( 75) 218 65.2 1e-11
NP_001092191 (OMIM: 604388) guanine nucleotide-bin ( 75) 204 61.4 1.4e-10
NP_004476 (OMIM: 604388) guanine nucleotide-bindin ( 75) 204 61.4 1.4e-10
NP_001092192 (OMIM: 604388) guanine nucleotide-bin ( 75) 204 61.4 1.4e-10
XP_006711824 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 204 61.4 1.4e-10
XP_011542469 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 204 61.4 1.4e-10
NP_001185683 (OMIM: 139391) guanine nucleotide-bin ( 69) 147 46.0 5.7e-06
NP_001185685 (OMIM: 139391) guanine nucleotide-bin ( 69) 147 46.0 5.7e-06
NP_001185684 (OMIM: 139391) guanine nucleotide-bin ( 69) 147 46.0 5.7e-06
NP_113686 (OMIM: 139391) guanine nucleotide-bindin ( 69) 147 46.0 5.7e-06
NP_004117 (OMIM: 604390) guanine nucleotide-bindin ( 73) 143 44.9 1.3e-05
NP_068774 (OMIM: 189970) guanine nucleotide-bindin ( 74) 129 41.1 0.00018
NP_001316355 (OMIM: 189970) guanine nucleotide-bin ( 74) 129 41.1 0.00018
>>NP_001017998 (OMIM: 604389) guanine nucleotide-binding (68 aa)
initn: 436 init1: 436 opt: 436 Z-score: 650.5 bits: 124.1 E(85289): 1.7e-29
Smith-Waterman score: 436; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KB4 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
10 20 30 40 50 60
pF1KB4 EPRSCALL
::::::::
NP_001 EPRSCALL
>>NP_001185593 (OMIM: 604389) guanine nucleotide-binding (68 aa)
initn: 436 init1: 436 opt: 436 Z-score: 650.5 bits: 124.1 E(85289): 1.7e-29
Smith-Waterman score: 436; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KB4 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
10 20 30 40 50 60
pF1KB4 EPRSCALL
::::::::
NP_001 EPRSCALL
>>NP_005265 (OMIM: 600874) guanine nucleotide-binding pr (68 aa)
initn: 280 init1: 264 opt: 264 Z-score: 399.2 bits: 77.6 E(85289): 1.7e-15
Smith-Waterman score: 264; 52.9% identity (91.2% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KB4 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
::...:..:....:.::.::::..:.:::::::.:.:.:.::: .: ::.:: ...::::
NP_005 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
10 20 30 40 50 60
pF1KB4 EPRSCALL
. :..:
NP_005 PQKVCSFL
>>NP_443079 (OMIM: 604430) guanine nucleotide-binding pr (68 aa)
initn: 267 init1: 249 opt: 249 Z-score: 377.3 bits: 73.6 E(85289): 2.8e-14
Smith-Waterman score: 249; 52.9% identity (82.4% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KB4 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
::. . . ..:::::..:::.::::::.::..:..:: :.: .: :::::::. :::.
NP_443 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
10 20 30 40 50 60
pF1KB4 EPRSCALL
. . : .:
NP_443 DKKPCIIL
>>XP_016882095 (OMIM: 604430) PREDICTED: guanine nucleot (68 aa)
initn: 267 init1: 249 opt: 249 Z-score: 377.3 bits: 73.6 E(85289): 2.8e-14
Smith-Waterman score: 249; 52.9% identity (82.4% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KB4 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
::. . . ..:::::..:::.::::::.::..:..:: :.: .: :::::::. :::.
XP_016 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
10 20 30 40 50 60
pF1KB4 EPRSCALL
. . : .:
XP_016 DKKPCIIL
>>XP_016876866 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 230 init1: 212 opt: 228 Z-score: 346.3 bits: 67.9 E(85289): 1.5e-12
Smith-Waterman score: 228; 54.9% identity (78.9% similar) in 71 aa overlap (1-68:1-71)
10 20 30 40 50
pF1KB4 MSSGASASALQ--RLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNP
:.:. .:: : .::::::.::...:::::.:::.:. :: .: .: ::. :::. ::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KB4 FREPRS-CALL
::: . ::.:
XP_016 FREKKFFCAIL
70
>>NP_001230702 (OMIM: 606981) guanine nucleotide-binding (71 aa)
initn: 230 init1: 212 opt: 228 Z-score: 346.3 bits: 67.9 E(85289): 1.5e-12
Smith-Waterman score: 228; 54.9% identity (78.9% similar) in 71 aa overlap (1-68:1-71)
10 20 30 40 50
pF1KB4 MSSGASASALQ--RLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNP
:.:. .:: : .::::::.::...:::::.:::.:. :: .: .: ::. :::. ::
NP_001 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KB4 FREPRS-CALL
::: . ::.:
NP_001 FREKKFFCAIL
70
>>XP_011535148 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 230 init1: 212 opt: 228 Z-score: 346.3 bits: 67.9 E(85289): 1.5e-12
Smith-Waterman score: 228; 54.9% identity (78.9% similar) in 71 aa overlap (1-68:1-71)
10 20 30 40 50
pF1KB4 MSSGASASALQ--RLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNP
:.:. .:: : .::::::.::...:::::.:::.:. :: .: .: ::. :::. ::
XP_011 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KB4 FREPRS-CALL
::: . ::.:
XP_011 FREKKFFCAIL
70
>>XP_016876865 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 230 init1: 212 opt: 228 Z-score: 346.3 bits: 67.9 E(85289): 1.5e-12
Smith-Waterman score: 228; 54.9% identity (78.9% similar) in 71 aa overlap (1-68:1-71)
10 20 30 40 50
pF1KB4 MSSGASASALQ--RLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNP
:.:. .:: : .::::::.::...:::::.:::.:. :: .: .: ::. :::. ::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KB4 FREPRS-CALL
::: . ::.:
XP_016 FREKKFFCAIL
70
>>NP_001230703 (OMIM: 606981) guanine nucleotide-binding (71 aa)
initn: 230 init1: 212 opt: 228 Z-score: 346.3 bits: 67.9 E(85289): 1.5e-12
Smith-Waterman score: 228; 54.9% identity (78.9% similar) in 71 aa overlap (1-68:1-71)
10 20 30 40 50
pF1KB4 MSSGASASALQ--RLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNP
:.:. .:: : .::::::.::...:::::.:::.:. :: .: .: ::. :::. ::
NP_001 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KB4 FREPRS-CALL
::: . ::.:
NP_001 FREKKFFCAIL
70
68 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:08:25 2016 done: Fri Nov 4 03:08:26 2016
Total Scan time: 3.900 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]