FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4666, 68 aa
  1>>>pF1KB4666 68 - 68 aa - 68 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6383+/-0.000493; mu= 9.8989+/- 0.030
 mean_var=47.3347+/- 9.273, 0's: 0 Z-trim(113.2): 12  B-trim: 16 in 1/52
 Lambda= 0.186416
 statistics sampled from 13852 (13864) to 13852 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.426), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9          (  68)  436 123.6 9.5e-30
CCDS696.1 GNG5 gene_id:2787|Hs108|chr1             (  68)  264 77.3   8e-16
CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19          (  68)  249 73.3 1.3e-14
CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14         (  71)  228 67.6 6.8e-13
CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1         (  72)  222 66.0 2.1e-12
CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11           (  75)  218 65.0 4.6e-12
CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1            (  75)  204 61.2 6.3e-11


>>CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9               (68 aa)
 initn: 436 init1: 436 opt: 436  Z-score: 647.5  bits: 123.6 E(32554): 9.5e-30
Smith-Waterman score: 436; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KB4 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
               10        20        30        40        50        60

               
pF1KB4 EPRSCALL
       ::::::::
CCDS35 EPRSCALL
               

>>CCDS696.1 GNG5 gene_id:2787|Hs108|chr1                  (68 aa)
 initn: 280 init1: 264 opt: 264  Z-score: 397.5  bits: 77.3 E(32554): 8e-16
Smith-Waterman score: 264; 52.9% identity (91.2% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KB4 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
       ::...:..:....:.::.::::..:.:::::::.:.:.:.::: .: ::.:: ...::::
CCDS69 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
               10        20        30        40        50        60

               
pF1KB4 EPRSCALL
         . :..:
CCDS69 PQKVCSFL
               

>>CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19               (68 aa)
 initn: 267 init1: 249 opt: 249  Z-score: 375.7  bits: 73.3 E(32554): 1.3e-14
Smith-Waterman score: 249; 52.9% identity (82.4% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KB4 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
       ::.  . .  ..:::::..:::.::::::.::..:..:: :.: .: :::::::. :::.
CCDS12 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
               10        20        30        40        50        60

               
pF1KB4 EPRSCALL
       . . : .:
CCDS12 DKKPCIIL
               

>>CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14              (71 aa)
 initn: 230 init1: 212 opt: 228  Z-score: 344.9  bits: 67.6 E(32554): 6.8e-13
Smith-Waterman score: 228; 54.9% identity (78.9% similar) in 71 aa overlap (1-68:1-71)

               10          20        30        40        50        
pF1KB4 MSSGASASALQ--RLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNP
       :.:. .::  :  .::::::.::...:::::.:::.:. ::  .: .: ::. :::. ::
CCDS32 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
               10        20        30        40        50        60

       60         
pF1KB4 FREPRS-CALL
       ::: .  ::.:
CCDS32 FREKKFFCAIL
               70 

>>CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1              (72 aa)
 initn: 231 init1: 207 opt: 222  Z-score: 336.1  bits: 66.0 E(32554): 2.1e-12
Smith-Waterman score: 222; 47.8% identity (85.1% similar) in 67 aa overlap (2-68:7-72)

                    10        20        30        40        50     
pF1KB4      MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAG
             :..  :.: .: :.::.:::..::::::.:.:.:..:: ..: .: ::.:.:..
CCDS30 MSSKTASTNNIAQA-RRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
               10         20        30        40        50         

          60        
pF1KB4 SNPFREPRSCALL
        :::.. ..: .:
CCDS30 ENPFKDKKTCIIL
      60        70  

>>CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11                (75 aa)
 initn: 226 init1: 193 opt: 218  Z-score: 330.0  bits: 65.0 E(32554): 4.6e-12
Smith-Waterman score: 218; 50.7% identity (78.3% similar) in 69 aa overlap (1-68:7-75)

                     10        20        30        40        50    
pF1KB4       MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPA
             ..:  : .  ...:::::.::.. :::::.:::.:. ::  .::.: :.. ::.
CCDS80 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
               10        20        30        40        50        60

           60         
pF1KB4 GSNPFREPRS-CALL
       . ::::: .  ::::
CCDS80 SENPFREKKFFCALL
               70     

>>CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1                 (75 aa)
 initn: 236 init1: 187 opt: 204  Z-score: 309.7  bits: 61.2 E(32554): 6.3e-11
Smith-Waterman score: 204; 48.5% identity (75.0% similar) in 68 aa overlap (2-68:8-75)

                     10        20        30        40        50    
pF1KB4       MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPA
              .: .: :  .. :::::.:: ..:.:::::::.:  ::  .. .: :.. :::
CCDS16 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

           60         
pF1KB4 GSNPFREPRS-CALL
       . ::::: .  :..:
CCDS16 SENPFREKKFFCTIL
               70     




68 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:08:25 2016 done: Fri Nov  4 03:08:25 2016
 Total Scan time:  1.310 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]