Result of FASTA (ccds) for
pF1KB4637
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4637, 300 aa
1>>>pF1KB4637 300 - 300 aa - 300 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7072+/-0.000713; mu= 10.4802+/- 0.043
mean_var=116.7727+/-22.883, 0's: 0 Z-trim(113.8): 21 B-trim: 0 in 0/51
Lambda= 0.118687
statistics sampled from 14368 (14383) to 14368 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.442), width: 16
Scan time: 2.450
The best scores are: opt bits E(32554)
CCDS85.1 PHF13 gene_id:148479|Hs108|chr1 ( 300) 2093 368.5 3.4e-102
CCDS67144.1 PHF23 gene_id:79142|Hs108|chr17 ( 336) 434 84.5 1.2e-16
CCDS67143.1 PHF23 gene_id:79142|Hs108|chr17 ( 399) 434 84.5 1.4e-16
CCDS42250.1 PHF23 gene_id:79142|Hs108|chr17 ( 403) 434 84.5 1.4e-16
>>CCDS85.1 PHF13 gene_id:148479|Hs108|chr1 (300 aa)
initn: 2093 init1: 2093 opt: 2093 Z-score: 1948.1 bits: 368.5 E(32554): 3.4e-102
Smith-Waterman score: 2093; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)
10 20 30 40 50 60
pF1KB4 MDSDSCAAAFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MDSDSCAAAFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 TAGTIDSDGWDAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TAGTIDSDGWDAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 KRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAPSDPCSGWDSDTPSSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 KRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAPSDPCSGWDSDTPSSGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 CATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDEDIMVDSDDDSWDLVTCFCMKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 CATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDEDIMVDSDDDSWDLVTCFCMKP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRRSNRSRTGSRKLFLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRRSNRSRTGSRKLFLD
250 260 270 280 290 300
>>CCDS67144.1 PHF23 gene_id:79142|Hs108|chr17 (336 aa)
initn: 585 init1: 395 opt: 434 Z-score: 412.2 bits: 84.5 E(32554): 1.2e-16
Smith-Waterman score: 569; 36.8% identity (56.1% similar) in 321 aa overlap (10-286:17-326)
10 20 30 40 50
pF1KB4 MDSDSCAAAFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRS
..:: : :::::.:::::::.:::::::::: :..: : .
CCDS67 MLEAMAEPSPEDPPPTLKPETQPPE-KRRRTIEDFNKFCSFVLAYAGYIP-PSKEAPDSA
10 20 30 40 50
60 70 80 90
pF1KB4 SPSPANSTAGTI-DSDGWDAG--FSDI---------ASSVPLPVSDRCFSH---------
. . .. : :: .. .: :. .:.:.:. .::
CCDS67 TLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRKKDRKN
60 70 80 90 100 110
100 110 120 130
pF1KB4 --LQPT------LLQRAKPSNFLLDRKKTDKLKKKKKRKRRDSD------APGKEGYRGG
: : .:.: .:. : .: ...::.:::: . .. :: .
CCDS67 RKLGPGAGAGFGVLRRPRPTP--GDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQAPPS
120 130 140 150 160 170
140 150 160 170 180 190
pF1KB4 LLKLEAADPYVETPTSPTLQDI--PQAPSDPCSGWDSDTPSSGSCATVSPDQVKEIKTEG
: . : . . .:: : ..: ::: :. : .:.
CCDS67 DTDSEEEEEEEEEEEEEEMATVVGGEAPV-PVLPTPPEAPRPP--ATVHPEGVPPADSES
180 190 200 210 220 230
200 210 220 230 240
pF1KB4 KRTIVRQGKQVVFRDEDSTGN-------DEDIMVDSDDDSWDLVTCFCMKPFAGRPMIEC
:.. :. . .: :.... ::::::.: ::::::.::.: :::::::::::
CCDS67 KEV----GSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIEC
240 250 260 270 280
250 260 270 280 290 300
pF1KB4 NECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRRSNRSRTGSRKLFLD
. : ::::::::::.:.:::. : ::::.. . . ::
CCDS67 SLCGTWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
290 300 310 320 330
>>CCDS67143.1 PHF23 gene_id:79142|Hs108|chr17 (399 aa)
initn: 667 init1: 395 opt: 434 Z-score: 411.1 bits: 84.5 E(32554): 1.4e-16
Smith-Waterman score: 435; 33.7% identity (53.9% similar) in 258 aa overlap (39-286:158-389)
10 20 30 40 50 60
pF1KB4 AFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANSTAGTIDSD
:. : : . : : . . .
CCDS67 KLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRKKDRKNRKL-GP
130 140 150 160 170 180
70 80 90 100 110 120
pF1KB4 GWDAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKKKRKRRDSD
: :::. . : : . . :... . .. : . .. :.: . ::
CCDS67 GAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKA------ERGDRLPPPGPPQAPPSD
190 200 210 220 230 240
130 140 150 160 170 180
pF1KB4 APGKEGYRGGLLKLEAADPYV---ETPTSPTLQDIPQAPSDPCSGWDSDTPSSGSCATVS
. ..: . . : : :.:. :.: :.:: : :::
CCDS67 TDSEEEEEEEEEEEEEEMATVVGGEAPV-PVLPTPPEAPRPP--------------ATVH
250 260 270 280
190 200 210 220 230
pF1KB4 PDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGN-------DEDIMVDSDDDSWDLVTCFCM
:. : .:.:.. :. . .: :.... ::::::.: ::::::.::.:
CCDS67 PEGVPPADSESKEV----GSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCR
290 300 310 320 330 340
240 250 260 270 280 290
pF1KB4 KPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRRSNRSRTGSRKLF
:::::::::::. : ::::::::::.:.:::. : ::::.. . . ::
CCDS67 KPFAGRPMIECSLCGTWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
350 360 370 380 390
300
pF1KB4 LD
>>CCDS42250.1 PHF23 gene_id:79142|Hs108|chr17 (403 aa)
initn: 641 init1: 395 opt: 434 Z-score: 411.1 bits: 84.5 E(32554): 1.4e-16
Smith-Waterman score: 435; 33.7% identity (53.9% similar) in 258 aa overlap (39-286:162-393)
10 20 30 40 50 60
pF1KB4 AFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANSTAGTIDSD
:. : : . : : . . .
CCDS42 KLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRKKDRKNRKL-GP
140 150 160 170 180 190
70 80 90 100 110 120
pF1KB4 GWDAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKKKRKRRDSD
: :::. . : : . . :... . .. : . .. :.: . ::
CCDS42 GAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKA------ERGDRLPPPGPPQAPPSD
200 210 220 230 240
130 140 150 160 170 180
pF1KB4 APGKEGYRGGLLKLEAADPYV---ETPTSPTLQDIPQAPSDPCSGWDSDTPSSGSCATVS
. ..: . . : : :.:. :.: :.:: : :::
CCDS42 TDSEEEEEEEEEEEEEEMATVVGGEAPV-PVLPTPPEAPRPP--------------ATVH
250 260 270 280
190 200 210 220 230
pF1KB4 PDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGN-------DEDIMVDSDDDSWDLVTCFCM
:. : .:.:.. :. . .: :.... ::::::.: ::::::.::.:
CCDS42 PEGVPPADSESKEV----GSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCR
290 300 310 320 330 340
240 250 260 270 280 290
pF1KB4 KPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRRSNRSRTGSRKLF
:::::::::::. : ::::::::::.:.:::. : ::::.. . . ::
CCDS42 KPFAGRPMIECSLCGTWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
350 360 370 380 390 400
300
pF1KB4 LD
300 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:07:17 2016 done: Fri Nov 4 03:07:17 2016
Total Scan time: 2.450 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]