FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4623, 520 aa
  1>>>pF1KB4623 520 - 520 aa - 520 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6516+/-0.00107; mu= 16.3366+/- 0.064
 mean_var=63.9017+/-12.606, 0's: 0 Z-trim(102.5): 25  B-trim: 0 in 0/49
 Lambda= 0.160442
 statistics sampled from 6991 (6994) to 6991 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.578), E-opt: 0.2 (0.215), width:  16
 Scan time:  3.140

The best scores are:                                      opt bits E(32554)
CCDS3937.1 OXCT1 gene_id:5019|Hs108|chr5           ( 520) 3403 796.8       0
CCDS445.1 OXCT2 gene_id:64064|Hs108|chr1           ( 517) 2577 605.6 4.3e-173


>>CCDS3937.1 OXCT1 gene_id:5019|Hs108|chr5                (520 aa)
 initn: 3403 init1: 3403 opt: 3403  Z-score: 4254.4  bits: 796.8 E(32554):    0
Smith-Waterman score: 3403; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KB4 MAALKLLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYTDPVEAVKDIPDGATVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MAALKLLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYTDPVEAVKDIPDGATVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 EFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 AIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 AIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 TVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 TVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEAD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 ADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 ADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 KGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 KGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDK
              430       440       450       460       470       480

              490       500       510       520
pF1KB4 KKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIAN
       ::::::::::::::::::::::::::::::::::::::::
CCDS39 KKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIAN
              490       500       510       520

>>CCDS445.1 OXCT2 gene_id:64064|Hs108|chr1                (517 aa)
 initn: 2594 init1: 1386 opt: 2577  Z-score: 3221.1  bits: 605.6 E(32554): 4.3e-173
Smith-Waterman score: 2577; 74.4% identity (90.2% similar) in 519 aa overlap (1-519:1-516)

               10        20        30        40        50        60
pF1KB4 MAALKLLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYTDPVEAVKDIPDGATVL
       ::::.::.: :   . : ::: .  .::.  :.:: . ..:::.:::: :::: :::::.
CCDS44 MAALRLLASVLGRGVPAGGSGLALSQGCARCFATSPRLRAKFYADPVEMVKDISDGATVM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENA
       .::::::::::::: :::.: :: : .::.:.::..::::::: ..:..:.: ::::::.
CCDS44 IGGFGLCGIPENLIAALLRTRVKDLQVVSSNVGVEDFGLGLLLAARQVRRIVCSYVGENT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSV
         : :::.::::.::::::::::::::::::::::::::::::::::::.::.:. :: .
CCDS44 LCESQYLAGELELELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGAPIRYTPDGHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 AIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAET
       :. :.:::::::::.::.::.:: .::::::.:::::::::.::.::::::.::::::..
CCDS44 ALMSQPREVREFNGDHFLLERAIRADFALVKGWKADRAGNVVFRRSARNFNVPMCKAADV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 TVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDD
       :.:::::::..::: :::::.:.::: :.:::.:::::::::.: :: ::.: .    .:
CCDS44 TAVEVEEIVEVGAFPPEDIHVPNIYVDRVIKGQKYEKRIERLTILKEEDGDAGKE---ED
              250       260       270       280       290          

              310       320       330       340       350       360
pF1KB4 VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEAD
       .: :::.::::::::::::::::::::::::::::..::::.::::.:::::.: . :.:
CCDS44 ARTRIIRRAALEFEDGMYANLGIGIPLLASNFISPSMTVHLHSENGILGLGPFPTEDEVD
       300       310       320       330       340       350       

              370       380       390       400       410       420
pF1KB4 ADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMV
       ::::::::.:::.:::. ::.::.:::::::::..::::::::::::::::::::::: :
CCDS44 ADLINAGKQTVTVLPGGCFFASDDSFAMIRGGHIQLTMLGAMQVSKYGDLANWMIPGKKV
       360       370       380       390       400       410       

              430       440       450       460       470       480
pF1KB4 KGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDK
       :::::::::::: ::.:::::.: .: :. :::::::.:::::.::.::::::::::: .
CCDS44 KGMGGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEKAVFDVHR
       420       430       440       450       460       470       

              490       500       510       520
pF1KB4 KKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIAN
       :: ::: ::::::::::..::::: :::::.: ::::.: 
CCDS44 KKELTLRELWEGLTVDDIKKSTGCAFAVSPNLRPMQQVAP
       480       490       500       510       




520 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:56:31 2016 done: Sat Nov  5 05:56:31 2016
 Total Scan time:  3.140 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]