Result of FASTA (ccds) for
pF1KB4600
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4600, 306 aa
1>>>pF1KB4600 306 - 306 aa - 306 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7957+/-0.000887; mu= 7.9818+/- 0.054
mean_var=221.3924+/-44.061, 0's: 0 Z-trim(114.1): 28 B-trim: 0 in 0/56
Lambda= 0.086197
statistics sampled from 14691 (14715) to 14691 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.452), width: 16
Scan time: 2.090
The best scores are: opt bits E(32554)
CCDS41915.1 HNRNPC gene_id:3183|Hs108|chr14 ( 306) 1978 257.9 6.9e-69
CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14 ( 293) 1224 164.1 1.1e-40
CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1 ( 293) 1105 149.3 3.2e-36
CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1 ( 293) 1086 147.0 1.7e-35
CCDS72705.1 HNRNPCL3 gene_id:649330|Hs108|chr1 ( 293) 1067 144.6 8.5e-35
CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1 ( 293) 1067 144.6 8.5e-35
CCDS55253.1 RALYL gene_id:138046|Hs108|chr8 ( 291) 907 124.7 8.3e-29
CCDS55252.1 RALYL gene_id:138046|Hs108|chr8 ( 304) 907 124.7 8.5e-29
CCDS75760.1 RALYL gene_id:138046|Hs108|chr8 ( 280) 565 82.2 5.1e-16
CCDS13230.1 RALY gene_id:22913|Hs108|chr20 ( 306) 545 79.7 3e-15
CCDS13229.1 RALY gene_id:22913|Hs108|chr20 ( 290) 506 74.9 8.5e-14
CCDS75761.1 RALYL gene_id:138046|Hs108|chr8 ( 218) 480 71.5 6.6e-13
>>CCDS41915.1 HNRNPC gene_id:3183|Hs108|chr14 (306 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 1350.2 bits: 257.9 E(32554): 6.9e-69
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
pF1KB4 NGEDDS
::::::
CCDS41 NGEDDS
>>CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14 (293 aa)
initn: 1224 init1: 1224 opt: 1224 Z-score: 843.7 bits: 164.1 E(32554): 1.1e-40
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
70 80 90 100
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
230 240 250 260 270 280
pF1KB4 NGEDDS
::::::
CCDS45 NGEDDS
290
>>CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1 (293 aa)
initn: 1104 init1: 1104 opt: 1105 Z-score: 763.7 bits: 149.3 E(32554): 3.2e-36
Smith-Waterman score: 1680; 86.9% identity (92.8% similar) in 306 aa overlap (1-306:1-293)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
CCDS30 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
.:::::::::::::::.::.:::::::::::::.:::::::::::::
CCDS30 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
70 80 90 100
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
:::::: ::::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
CCDS30 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
:::::::::::::::::.:::::::::::::::::::::::::: ::.:: :::::::::
CCDS30 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
:.:::::.:::::::::.::::::: :::: :::.::::::::::::::::::::::::.
CCDS30 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST
230 240 250 260 270 280
pF1KB4 NGEDDS
::.:::
CCDS30 NGQDDS
290
>>CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1 (293 aa)
initn: 1085 init1: 1085 opt: 1086 Z-score: 750.9 bits: 147.0 E(32554): 1.7e-35
Smith-Waterman score: 1640; 84.6% identity (92.5% similar) in 306 aa overlap (1-306:1-293)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
:::::::: ::.:.:::::::::::::::::::::::::::::.::::::::::::: .:
CCDS76 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
.:::::::::::::::.:: ::::::::::::.:::::::::::::
CCDS76 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGS-------------
70 80 90 100
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
:::::: ::::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
CCDS76 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
:::::::::::::::::.:::::::::::::::::::::::::: ::.:: :::::::::
CCDS76 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
:.:::::.:::::::::.::::::: ::::::::.::.::.:::..::.::::::.:::.
CCDS76 SMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDST
230 240 250 260 270 280
pF1KB4 NGEDDS
::.:::
CCDS76 NGQDDS
290
>>CCDS72705.1 HNRNPCL3 gene_id:649330|Hs108|chr1 (293 aa)
initn: 1066 init1: 1066 opt: 1067 Z-score: 738.2 bits: 144.6 E(32554): 8.5e-35
Smith-Waterman score: 1642; 84.6% identity (92.2% similar) in 306 aa overlap (1-306:1-293)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
CCDS72 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
.:::::::::::::::.::.:::::::::::::.:::::::::::::
CCDS72 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
70 80 90 100
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::..::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
CCDS72 SFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
:::::::::::::::::.::::::::::::::::::::::. ::.::.:: ::::::.::
CCDS72 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
: :::.:.::::::::::::.:::::: ::::::.::.:::::::::: ::::::::: :
CCDS72 SSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRA
230 240 250 260 270 280
pF1KB4 NGEDDS
::.:::
CCDS72 NGQDDS
290
>>CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1 (293 aa)
initn: 1066 init1: 1066 opt: 1067 Z-score: 738.2 bits: 144.6 E(32554): 8.5e-35
Smith-Waterman score: 1642; 84.6% identity (92.2% similar) in 306 aa overlap (1-306:1-293)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
CCDS76 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
.:::::::::::::::.::.:::::::::::::.:::::::::::::
CCDS76 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
70 80 90 100
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::..::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
CCDS76 SFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
:::::::::::::::::.::::::::::::::::::::::. ::.::.:: ::::::.::
CCDS76 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
: :::.:.::::::::::::.:::::: ::::::.::.:::::::::: ::::::::: :
CCDS76 SSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRA
230 240 250 260 270 280
pF1KB4 NGEDDS
::.:::
CCDS76 NGQDDS
290
>>CCDS55253.1 RALYL gene_id:138046|Hs108|chr8 (291 aa)
initn: 727 init1: 504 opt: 907 Z-score: 630.7 bits: 124.7 E(32554): 8.3e-29
Smith-Waterman score: 907; 53.9% identity (75.4% similar) in 293 aa overlap (3-284:8-291)
10 20 30 40 50
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV
::::::.::.:.::::::::::: .::: :.::::::::::::::::::.:::
CCDS55 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPS
::..::.::::::::..:.:::: ::::.:.::: : : : :: . .: . :
CCDS55 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALY----RLESKE
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 PLLS-SSFDLDYDFQRD-YYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGF
:.:: ... .:::. :: .:.:...: .:::::: :::.: :: ::. .:.::::. :
CCDS55 PFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 NSKSGQRGS---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKN
. :.:.:.. : ..:::.:.::.::::::::: :.:::: ::::::.:. .: .:.
CCDS55 SMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK
180 190 200 210 220 230
240 250 260 270 280
pF1KB4 DKSE-----EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK
. : .:. : . : . .::: : :. : : ...: .:: : . . ::
CCDS55 QLEESLVLIQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
240 250 260 270 280 290
290 300
pF1KB4 DDEKEAEEGEDDRDSANGEDDS
>>CCDS55252.1 RALYL gene_id:138046|Hs108|chr8 (304 aa)
initn: 727 init1: 504 opt: 907 Z-score: 630.4 bits: 124.7 E(32554): 8.5e-29
Smith-Waterman score: 907; 53.9% identity (75.4% similar) in 293 aa overlap (3-284:21-304)
10 20 30 40
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGK
::::::.::.:.::::::::::: .::: :.:::::::::
CCDS55 MSKRRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 IVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAA
:::::::::.:::::..::.::::::::..:.:::: ::::.:.::: : : : :: .
CCDS55 IVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 EMYGSVTEHPSPSPLLS-SSFDLDYDFQRD-YYDRMYSYPARVPPPPPIARAVVPSKRQR
.: . : :.:: ... .:::. :: .:.:...: .:::::: :::.: :: :
CCDS55 ALY----RLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPR
130 140 150 160 170
170 180 190 200 210
pF1KB4 VSGNTSRRGKSGFNSKSGQRGS---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKI
:. .:.::::. :. :.:.:.. : ..:::.:.::.::::::::: :.:::: ::::
CCDS55 VAVTTTRRGKGVFSMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKI
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB4 EKEQSKQAVEMKNDKSE-----EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDD
::.:. .: .:.. : .:. : . : . .::: : :. : : ...:
CCDS55 EKQQKAEAEAQKKQLEESLVLIQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDF
240 250 260 270 280 290
280 290 300
pF1KB4 NEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
.:: : . . ::
CCDS55 DEDGGHELFLQIK
300
>>CCDS75760.1 RALYL gene_id:138046|Hs108|chr8 (280 aa)
initn: 723 init1: 500 opt: 565 Z-score: 401.0 bits: 82.2 E(32554): 5.1e-16
Smith-Waterman score: 884; 53.1% identity (73.6% similar) in 292 aa overlap (3-284:8-280)
10 20 30 40 50
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV
::::::.::.:.::::::::::: .::: :.::::::::::::::::::.:::
CCDS75 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPS
::..::.::::::::..:.:::: ::::.:.::: : : : :: . .:
CCDS75 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALY----------
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 PLLSSSFDLDYDFQRD-YYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN
:.. .:::. :: .:.:...: .:::::: :::.: :: ::. .:.::::. :.
CCDS75 ----SGYVFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFS
120 130 140 150 160
180 190 200 210 220 230
pF1KB4 SKSGQRGS---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKND
:.:.:.. : ..:::.:.::.::::::::: :.:::: ::::::.:. .: .:..
CCDS75 MKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQ
170 180 190 200 210 220
240 250 260 270 280
pF1KB4 KSE-----EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIKD
: .:. : . : . .::: : :. : : ...: .:: : . . ::
CCDS75 LEESLVLIQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
230 240 250 260 270 280
290 300
pF1KB4 DEKEAEEGEDDRDSANGEDDS
>>CCDS13230.1 RALY gene_id:22913|Hs108|chr20 (306 aa)
initn: 672 init1: 479 opt: 545 Z-score: 387.1 bits: 79.7 E(32554): 3e-15
Smith-Waterman score: 723; 44.6% identity (68.7% similar) in 316 aa overlap (2-302:7-303)
10 20 30 40 50
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV
:::::::.::.:.::::::::::: .:::::::.::::::...:::::::.:::
CCDS13 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPS
:: :::.::::: ::.::..:::.::::.:.::: .: : :.::.:. .:
CCDS13 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY----------
70 80 90 100
120 130 140 150 160 170
pF1KB4 PLLSSSFDLDYDFQRD-YYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG--
:.. .:::. :: .:::...: .:. : : . ::: : :: ::. :: :..
CCDS13 ----SGYIFDYDYYRDDFYDRLFDYRGRLSPVP-VPRAV-PVKRPRVTVPLVRRVKTNVP
110 120 130 140 150 160
180 190 200 210 220
pF1KB4 ---FNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAV-EM
: ... :: . :::...::::: ::::::...:.:: ::.: ::. . .
CCDS13 VKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKK
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB4 KNDKSEEEQSSSSVKKDETNVKMESEGGA--------DDSAEEGDLLDDDDNEDRGDDQL
:.: . .... . . . ::. . ..: : . ..: ::..
CCDS13 KGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-
230 240 250 260 270 280
290 300
pF1KB4 ELIKDDEKEAEEGEDDRDSANGEDDS
:. .:.: :...: :. .:
CCDS13 GLLTHSEEELEHSQDT-DADDGALQ
290 300
306 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:03:25 2016 done: Fri Nov 4 03:03:25 2016
Total Scan time: 2.090 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]