Result of FASTA (ccds) for
pF1KB4585
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4585, 346 aa
1>>>pF1KB4585 346 - 346 aa - 346 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9152+/-0.000756; mu= 14.0509+/- 0.046
mean_var=87.8153+/-17.391, 0's: 0 Z-trim(110.9): 28 B-trim: 29 in 1/50
Lambda= 0.136864
statistics sampled from 11914 (11930) to 11914 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.366), width: 16
Scan time: 2.770
The best scores are: opt bits E(32554)
CCDS14391.1 EFNB1 gene_id:1947|Hs108|chrX ( 346) 2329 469.4 1.9e-132
CCDS9507.1 EFNB2 gene_id:1948|Hs108|chr13 ( 333) 603 128.6 7.3e-30
CCDS11120.1 EFNB3 gene_id:1949|Hs108|chr17 ( 340) 589 125.8 5e-29
>>CCDS14391.1 EFNB1 gene_id:1947|Hs108|chrX (346 aa)
initn: 2329 init1: 2329 opt: 2329 Z-score: 2491.3 bits: 469.4 E(32554): 1.9e-132
Smith-Waterman score: 2329; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KB4 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 DIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 YMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPS
250 260 270 280 290 300
310 320 330 340
pF1KB4 DIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
310 320 330 340
>>CCDS9507.1 EFNB2 gene_id:1948|Hs108|chr13 (333 aa)
initn: 1189 init1: 562 opt: 603 Z-score: 649.6 bits: 128.6 E(32554): 7.3e-30
Smith-Waterman score: 1219; 55.7% identity (77.3% similar) in 343 aa overlap (8-346:9-333)
10 20 30 40 50
pF1KB4 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDK
: : : :: ::: : . :::. :.: : ::: :.:::.::.::::
CCDS95 MAVRRDSVWKYCWGVLMV---LCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDK
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 LDIICPRAEAGR--PYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEF
::::::.... :::::.:.: .:: :. . . :..: .:.:.:.::::::::
CCDS95 LDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 SPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAV--TPEQ
::: ::::.:..:::: ::::::::::.:.:::::.::.:::.:::::: ... : ..
CCDS95 SPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 LTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFN
: :: :: .. . .: .: . . :.: : :.: ::. ....
CCDS95 DPTRRPELEAGTNGRSSTTSPFVKPNPGSSTD-------------GNSAGHSGN--NILG
180 190 200 210 220
240 250 260 270 280 290
pF1KB4 SKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTA
:.:::::....::.::..::: :.::::: :.:::::. :....:::::::.:: ....
CCDS95 SEVALFAGIASGCIIFIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNN
230 240 250 260 270 280
300 310 320 330 340
pF1KB4 GTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
:.:::::::::::... .:::::::::::::::::::::::::::::::::
CCDS95 GSEPSDIIIPLRTADSVFCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
290 300 310 320 330
>>CCDS11120.1 EFNB3 gene_id:1949|Hs108|chr17 (340 aa)
initn: 806 init1: 407 opt: 589 Z-score: 634.6 bits: 125.8 E(32554): 5e-29
Smith-Waterman score: 803; 40.6% identity (65.3% similar) in 357 aa overlap (4-346:8-340)
10 20 30 40 50
pF1KB4 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKI
:: .: :... .. :.. :. :::: :.: : .: . : :.::.:
CCDS11 MGPPHSGPGGVRVG----ALLLLGVLGLVSGLS--LEPVYWNSANKRFQAEGGYVLYPQI
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 GDKLDIICPRAEAGRP-----YEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFT
::.::..::::. : ::.:::::: :. : . ::.:.::.::. ..:::
CCDS11 GDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDLRFT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 IKFQEFSPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDP-NA
:::::.::: : ::..:::::: .::.:. ::::. .:::: :: ::....:::.: ..
CCDS11 IKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQSPRGG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 VTPEQLTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDP
..:.. .. : : : . . . ::... :: .. . . : : . . .:
CCDS11 AVPRKPVSEMPM-ERDRGAAHSLE-PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAA
180 190 200 210 220 230
240 250 260 270 280
pF1KB4 DGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQR-AAALSLSTLAS-P
:. . :....::: .. :.:. : ...: . :.. .:
CCDS11 GGL---ALLLLGVAGAGGAMCW-------------RRRRAKPSESRHPGPGSFGRGGSLG
240 250 260 270
290 300 310 320 330 340
pF1KB4 KGGSGTAG---TEPSDIIIPLR---TTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANI
::.: : .::... : :: ... .:::::::::::::::::::. ::::: ::
CCDS11 LGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPPNI
280 290 300 310 320 330
pF1KB4 YYKV
::::
CCDS11 YYKV
340
346 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:43:43 2016 done: Sat Nov 5 02:43:43 2016
Total Scan time: 2.770 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]