FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4540, 348 aa
  1>>>pF1KB4540 348 - 348 aa - 348 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4012+/-0.000933; mu= 18.2915+/- 0.057
 mean_var=113.9698+/-22.545, 0's: 0 Z-trim(110.1): 38  B-trim: 216 in 1/49
 Lambda= 0.120138
 statistics sampled from 11317 (11351) to 11317 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.349), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS4271.1 RNF14 gene_id:9604|Hs108|chr5           ( 348) 2468 438.3 4.4e-123
CCDS4270.1 RNF14 gene_id:9604|Hs108|chr5           ( 474) 2468 438.5 5.3e-123
CCDS47639.1 ANKIB1 gene_id:54467|Hs108|chr7        (1089)  336 69.4 1.6e-11


>>CCDS4271.1 RNF14 gene_id:9604|Hs108|chr5                (348 aa)
 initn: 2468 init1: 2468 opt: 2468  Z-score: 2323.3  bits: 438.3 E(32554): 4.4e-123
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)

               10        20        30        40        50        60
pF1KB4 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MQFLKEETLAYLNIVSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKAC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCM
              250       260       270       280       290       300

              310       320       330       340        
pF1KB4 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED
              310       320       330       340        

>>CCDS4270.1 RNF14 gene_id:9604|Hs108|chr5                (474 aa)
 initn: 2468 init1: 2468 opt: 2468  Z-score: 2321.7  bits: 438.5 E(32554): 5.3e-123
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:127-474)

                                             10        20        30
pF1KB4                               MQFLKEETLAYLNIVSPFELKIGSQKKVQR
                                     ::::::::::::::::::::::::::::::
CCDS42 WLSPTQLSALCKHLDNLWEEHRGSVVLFAWMQFLKEETLAYLNIVSPFELKIGSQKKVQR
        100       110       120       130       140       150      

               40        50        60        70        80        90
pF1KB4 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSK
        160       170       180       190       200       210      

              100       110       120       130       140       150
pF1KB4 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATP
        220       230       240       250       260       270      

              160       170       180       190       200       210
pF1KB4 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAF
        280       290       300       310       320       330      

              220       230       240       250       260       270
pF1KB4 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEW
        340       350       360       370       380       390      

              280       290       300       310       320       330
pF1KB4 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNR
        400       410       420       430       440       450      

              340        
pF1KB4 LFYAVDVDDDIWEDEVED
       ::::::::::::::::::
CCDS42 LFYAVDVDDDIWEDEVED
        460       470    

>>CCDS47639.1 ANKIB1 gene_id:54467|Hs108|chr7             (1089 aa)
 initn: 418 init1: 186 opt: 336  Z-score: 320.4  bits: 69.4 E(32554): 1.6e-11
Smith-Waterman score: 341; 26.0% identity (51.5% similar) in 231 aa overlap (93-308:332-549)

             70        80        90       100       110       120  
pF1KB4 QDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLK
                                     ::.::.:     :    . : : .:..: .
CCDS47 LPSPRTPRTTRSSVTSPDEISLSPGDLDTSLCDICMCSISVFEDPVDMPCGHDFCRGCWE
             310       320       330       340       350       360 

            130       140       150       160       170       180  
pF1KB4 DYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADVVY
       ......:..:... . ::   : ...    .. .:  :.  :: .. ... ..    . .
CCDS47 SFLNLKIQEGEAHNIFCPAYDCFQLVPVDIIESVVSKEMDKRYLQFDIKAFVENNPAIKW
             370       380       390       400       410       420 

            190        200                     210       220       
pF1KB4 CPRPCCQLPV-MQEPGCTMGICSSCNFA--------------FCTLCRLTYHGVSPCKVT
       :: : :.  : . . : . .  .. .:               ::  :    :   ::   
CCDS47 CPTPGCDRAVRLTKQGSNTSGSDTLSFPLLRAPAVDCGKGHLFCWECLGEAH--EPCDCQ
             430       440       450       460       470           

       230       240       250       260       270       280       
pF1KB4 AEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEK
       . :      ..::     :   ..  :   ...: :.  .  ::  ::: :  : .::.:
CCDS47 TWK------NWLQKITEMKP--EELVG---VSEAYEDAANCLWLLTNSKPCANCKSPIQK
     480             490            500       510       520        

       290       300       310       320       330       340       
pF1KB4 LDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVE
        .:::.: :. :   :::::.                                       
CCDS47 NEGCNHMQCAKCKYDFCWICLEEWKKHSSSTGGYYRCTRYEVIQHVEEQSKEMTVEAEKK
      530       540       550       560       570       580        




348 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:35:54 2016 done: Fri Nov  4 20:35:54 2016
 Total Scan time:  2.230 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]