Result of FASTA (ccds) for
pF1KB4448
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4448, 173 aa
1>>>pF1KB4448 173 - 173 aa - 173 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5450+/-0.00111; mu= 12.0738+/- 0.067
mean_var=92.8429+/-19.059, 0's: 0 Z-trim(104.6): 63 B-trim: 286 in 1/50
Lambda= 0.133107
statistics sampled from 7944 (8006) to 7944 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.246), width: 16
Scan time: 1.830
The best scores are: opt bits E(32554)
CCDS43197.1 MYL5 gene_id:4636|Hs108|chr4 ( 173) 1099 221.0 3e-58
CCDS31901.1 MYL2 gene_id:4633|Hs108|chr12 ( 166) 743 152.6 1.1e-37
CCDS5478.1 MYL7 gene_id:58498|Hs108|chr7 ( 175) 736 151.3 2.9e-37
CCDS10677.1 MYLPF gene_id:29895|Hs108|chr16 ( 169) 677 139.9 7.2e-34
CCDS11830.1 MYL12A gene_id:10627|Hs108|chr18 ( 171) 615 128.0 2.8e-30
CCDS77145.1 MYL12A gene_id:10627|Hs108|chr18 ( 177) 615 128.0 2.9e-30
CCDS11831.1 MYL12B gene_id:103910|Hs108|chr18 ( 172) 610 127.1 5.5e-30
CCDS34713.1 MYL10 gene_id:93408|Hs108|chr7 ( 226) 606 126.4 1.1e-29
CCDS13276.1 MYL9 gene_id:10398|Hs108|chr20 ( 172) 597 124.6 3.1e-29
CCDS1832.1 CALM2 gene_id:805|Hs108|chr2 ( 149) 314 70.2 6.4e-13
CCDS9892.1 CALM1 gene_id:801|Hs108|chr14 ( 149) 314 70.2 6.4e-13
CCDS33061.1 CALM3 gene_id:808|Hs108|chr19 ( 149) 314 70.2 6.4e-13
CCDS7069.1 CALML3 gene_id:810|Hs108|chr10 ( 149) 293 66.1 1e-11
>>CCDS43197.1 MYL5 gene_id:4636|Hs108|chr4 (173 aa)
initn: 1099 init1: 1099 opt: 1099 Z-score: 1159.3 bits: 221.0 E(32554): 3e-58
Smith-Waterman score: 1099; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
70 80 90 100 110 120
130 140 150 160 170
pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
130 140 150 160 170
>>CCDS31901.1 MYL2 gene_id:4633|Hs108|chr12 (166 aa)
initn: 780 init1: 722 opt: 743 Z-score: 790.1 bits: 152.6 E(32554): 1.1e-37
Smith-Waterman score: 743; 64.0% identity (86.6% similar) in 172 aa overlap (1-172:1-166)
10 20 30 40 50 60
pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
:: .:.::. ::: .::::: ::::::::::::::.:::::::::::.::.::.:
CCDS31 MAPKKAKKRAGGA------NSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFA
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
.::..:::..:.: :.::: ::::::.::..:::::.:.: :::::::::..::.::: .
CCDS31 ALGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVL
60 70 80 90 100 110
130 140 150 160 170
pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
. .:....: .::.... ::::::: ::.:::::: : ..:::::::.
CCDS31 KADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD
120 130 140 150 160
>>CCDS5478.1 MYL7 gene_id:58498|Hs108|chr7 (175 aa)
initn: 730 init1: 714 opt: 736 Z-score: 782.5 bits: 151.3 E(32554): 2.9e-37
Smith-Waterman score: 736; 63.4% identity (89.7% similar) in 175 aa overlap (1-173:1-175)
10 20 30 40 50
pF1KB4 MASRK--TKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDT
::::: :. : ... .:::.:::::: :::.:::::::::. .::::::.: : ::..:
CCDS54 MASRKAGTRGKVAATKQAQRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKADLRET
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 YASLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKG
:..:::..: ..::::::.:..::::::.::.::::::.::: ::.::.::.:.::.:::
CCDS54 YSQLGKVSVPEEELDAMLQEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGKG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 KINKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
.::. .:.::..::::.. ::.::: .. .:.:::.:::.: :.::::.::::
CCDS54 VVNKDEFKQLLLTQADKFSPAEVEQMFALTPMDLAGNIDYKSLCYIITHGDEKEE
130 140 150 160 170
>>CCDS10677.1 MYLPF gene_id:29895|Hs108|chr16 (169 aa)
initn: 718 init1: 664 opt: 677 Z-score: 721.5 bits: 139.9 E(32554): 7.2e-34
Smith-Waterman score: 677; 57.7% identity (84.6% similar) in 175 aa overlap (1-173:1-168)
10 20 30 40 50
pF1KB4 MASRKTKKK--EGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDT
:: ...:.. ::: ::.::: :.::::::::::::..::::::.::::::.::
CCDS10 MAPKRAKRRTVEGG-------SSSVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDT
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 YASLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKG
.:..:. :::..:::::.::::::::::.::..:::::.:.: :..: .:::.:::.:::
CCDS10 FAAMGRLNVKNEELDAMMKEASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 KINKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
:.:.....:: .: :... ::. .:. ::.::.::: . ::::::. :..
CCDS10 TIKKKFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE
120 130 140 150 160
>>CCDS11830.1 MYL12A gene_id:10627|Hs108|chr18 (171 aa)
initn: 586 init1: 341 opt: 615 Z-score: 657.1 bits: 128.0 E(32554): 2.8e-30
Smith-Waterman score: 615; 53.8% identity (80.3% similar) in 173 aa overlap (1-173:1-170)
10 20 30 40 50 60
pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
:.:..:: : : :::.::::. :.:.:::::::::...:::::::::::::.: :
CCDS11 MSSKRTKTKTKK--RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
:::: : :. ::::..:: :::::::::..:::::.::: :..: ::: .: .. : :
CCDS11 SLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI
60 70 80 90 100 110
130 140 150 160 170
pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
...:...:: ...:..: ::::.... : :: ::..: .. .. :: . ..
CCDS11 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
120 130 140 150 160 170
>>CCDS77145.1 MYL12A gene_id:10627|Hs108|chr18 (177 aa)
initn: 586 init1: 341 opt: 615 Z-score: 656.9 bits: 128.0 E(32554): 2.9e-30
Smith-Waterman score: 615; 53.8% identity (80.3% similar) in 173 aa overlap (1-173:7-176)
10 20 30 40 50
pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKED
:.:..:: : : :::.::::. :.:.:::::::::...::::::::::::
CCDS77 MDLTTTMSSKRTKTKTKK--RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKED
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 LKDTYASLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDP
:.: ::::: : :. ::::..:: :::::::::..:::::.::: :..: ::: .:
CCDS77 LHDMLASLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 DGKGKINKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
.. : :...:...:: ...:..: ::::.... : :: ::..: .. .. :: . ..
CCDS77 EATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
120 130 140 150 160 170
>>CCDS11831.1 MYL12B gene_id:103910|Hs108|chr18 (172 aa)
initn: 586 init1: 341 opt: 610 Z-score: 651.9 bits: 127.1 E(32554): 5.5e-30
Smith-Waterman score: 610; 53.8% identity (79.8% similar) in 173 aa overlap (1-173:1-171)
10 20 30 40 50 60
pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
:.:.:.: : : :::.::::. :.:.:::::::::...:::::::::::::.: :
CCDS11 MSSKKAKTKTTKK-RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
:::: : : ::::..:: :::::::::..:::::.::: :..: ::: .: .. : :
CCDS11 SLGK-NPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI
60 70 80 90 100 110
130 140 150 160 170
pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
...:...:: ...:..: ::::.... : :: ::..: .. .. :: . ..
CCDS11 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
120 130 140 150 160 170
>>CCDS34713.1 MYL10 gene_id:93408|Hs108|chr7 (226 aa)
initn: 749 init1: 604 opt: 606 Z-score: 646.1 bits: 126.4 E(32554): 1.1e-29
Smith-Waterman score: 638; 53.7% identity (70.2% similar) in 205 aa overlap (2-172:27-226)
10 20 30
pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEF
: :...:. :. ::::::: :.:.:::::
CCDS34 MLLRLVSNSWPQVILPPRPPKVLGLQAPRRARKRAEGT-----ASSNVFSMFDQSQIQEF
10 20 30 40 50
40 50 60
pF1KB4 KE----------------------------------AFTLMDQNRDGFIDKEDLKDTYAS
:: :::.::::::::::::::.::.:.
CCDS34 KESLALSPRLERNGMISAHCNLCLTGSSNSPASASQAFTIMDQNRDGFIDKEDLRDTFAA
60 70 80 90 100 110
70 80 90 100 110 120
pF1KB4 LGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKIN
::. :::..::.::.::: ::::::.::..:::::.::: :::::.:::..: .::: ..
CCDS34 LGRINVKNEELEAMVKEAPGPINFTVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVK
120 130 140 150 160 170
130 140 150 160 170
pF1KB4 KEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
. ::. ::.:::... ::: ::: :: :::::. : :::::::::.
CCDS34 ADVIKEKLMTQADRFSEEEVKQMFAAFPPDVCGNLDYRNLCYVITHGEEKD
180 190 200 210 220
>>CCDS13276.1 MYL9 gene_id:10398|Hs108|chr20 (172 aa)
initn: 568 init1: 310 opt: 597 Z-score: 638.4 bits: 124.6 E(32554): 3.1e-29
Smith-Waterman score: 597; 52.0% identity (80.9% similar) in 173 aa overlap (1-173:1-171)
10 20 30 40 50 60
pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
:.:...: : : :::.::::. :.:.:::::::::...:::::::::::::.: :
CCDS13 MSSKRAKAKTTKK-RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
:::: : :. :..:..:: :::::::::..:::::.::: :..: ::: .: ...: :
CCDS13 SLGK-NPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFI
60 70 80 90 100 110
130 140 150 160 170
pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
.......:: ...:..: ::::.:.. : :: ::..: .. .. :: . ..
CCDS13 HEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD
120 130 140 150 160 170
>>CCDS1832.1 CALM2 gene_id:805|Hs108|chr2 (149 aa)
initn: 285 init1: 193 opt: 314 Z-score: 345.5 bits: 70.2 E(32554): 6.4e-13
Smith-Waterman score: 314; 37.3% identity (73.2% similar) in 142 aa overlap (29-166:7-147)
10 20 30 40 50 60
pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
. :: ::::::.:.:.. :: : ..: ..
CCDS18 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR
10 20 30
70 80 90 100 110
pF1KB4 SLGKTNVKDDELDAMLKEA----SGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDG
:::. : . ::. :..:. .: :.: ::.....:.. ::.:: : .::...: ::
CCDS18 SLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB4 KGKINKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
.: :. ..... . ..:.: ::::.:.. :.:: :...:. . ..:
CCDS18 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
100 110 120 130 140
173 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:18:18 2016 done: Fri Nov 4 18:18:18 2016
Total Scan time: 1.830 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]