Result of FASTA (ccds) for
pF1KB4375
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4375, 389 aa
1>>>pF1KB4375 389 - 389 aa - 389 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.3726+/-0.0011; mu= -6.7298+/- 0.067
mean_var=496.6971+/-101.548, 0's: 0 Z-trim(116.5): 101 B-trim: 596 in 1/53
Lambda= 0.057548
statistics sampled from 17048 (17145) to 17048 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.527), width: 16
Scan time: 2.950
The best scores are: opt bits E(32554)
CCDS43966.1 EDA gene_id:1896|Hs108|chrX ( 389) 2706 238.6 7.6e-63
CCDS14394.1 EDA gene_id:1896|Hs108|chrX ( 391) 2692 237.4 1.7e-62
CCDS35319.2 EDA gene_id:1896|Hs108|chrX ( 386) 2672 235.7 5.3e-62
CCDS35318.2 EDA gene_id:1896|Hs108|chrX ( 135) 913 89.2 2.5e-18
CCDS55436.1 EDA gene_id:1896|Hs108|chrX ( 148) 913 89.2 2.6e-18
>>CCDS43966.1 EDA gene_id:1896|Hs108|chrX (389 aa)
initn: 2706 init1: 2706 opt: 2706 Z-score: 1241.8 bits: 238.6 E(32554): 7.6e-63
Smith-Waterman score: 2706; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:1-389)
10 20 30 40 50 60
pF1KB4 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGPVKNKKKGKKAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGPVKNKKKGKKAG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PPGPNGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGPQGPPGLQGPSGAADK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PPGPNGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGPQGPPGLQGPSGAADK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 AGTRENQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AGTRENQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 YFIYSQVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YFIYSQVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAV
310 320 330 340 350 360
370 380
pF1KB4 KMVHADISINMSKHTTFFGAIRLGEAPAS
:::::::::::::::::::::::::::::
CCDS43 KMVHADISINMSKHTTFFGAIRLGEAPAS
370 380
>>CCDS14394.1 EDA gene_id:1896|Hs108|chrX (391 aa)
initn: 2169 init1: 2169 opt: 2692 Z-score: 1235.5 bits: 237.4 E(32554): 1.7e-62
Smith-Waterman score: 2692; 99.5% identity (99.5% similar) in 391 aa overlap (1-389:1-391)
10 20 30 40 50 60
pF1KB4 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGPVKNKKKGKKAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGPVKNKKKGKKAG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PPGPNGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGPQGPPGLQGPSGAADK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PPGPNGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGPQGPPGLQGPSGAADK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 AGTRENQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AGTRENQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGT
250 260 270 280 290 300
310 320 330 340 350
pF1KB4 YFIYSQV--YYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKI
::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKI
310 320 330 340 350 360
360 370 380
pF1KB4 AVKMVHADISINMSKHTTFFGAIRLGEAPAS
:::::::::::::::::::::::::::::::
CCDS14 AVKMVHADISINMSKHTTFFGAIRLGEAPAS
370 380 390
>>CCDS35319.2 EDA gene_id:1896|Hs108|chrX (386 aa)
initn: 1880 init1: 1880 opt: 2672 Z-score: 1226.5 bits: 235.7 E(32554): 5.3e-62
Smith-Waterman score: 2672; 99.2% identity (99.2% similar) in 389 aa overlap (1-389:1-386)
10 20 30 40 50 60
pF1KB4 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGPVKNKKKGKKAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGPVKNKKKGKKAG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PPGPNGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGPQGPPGLQGPSGAADK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PPGPNGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGPQGPPGLQGPSGAADK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 AGTRENQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGT
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS35 AGTRENQPAVVHLQGQGSAIQVKN---GGVLNDWSRITMNPKVFKLHPRSGELEVLVDGT
250 260 270 280 290
310 320 330 340 350 360
pF1KB4 YFIYSQVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YFIYSQVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAV
300 310 320 330 340 350
370 380
pF1KB4 KMVHADISINMSKHTTFFGAIRLGEAPAS
:::::::::::::::::::::::::::::
CCDS35 KMVHADISINMSKHTTFFGAIRLGEAPAS
360 370 380
>>CCDS35318.2 EDA gene_id:1896|Hs108|chrX (135 aa)
initn: 913 init1: 913 opt: 913 Z-score: 442.6 bits: 89.2 E(32554): 2.5e-18
Smith-Waterman score: 913; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB4 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGPVKNKKKGKKAG
::::::::::::
CCDS35 AALHSDSQDGHQGHQ
130
>>CCDS55436.1 EDA gene_id:1896|Hs108|chrX (148 aa)
initn: 913 init1: 913 opt: 913 Z-score: 442.2 bits: 89.2 E(32554): 2.6e-18
Smith-Waterman score: 913; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB4 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGPVKNKKKGKKAG
::::::::::::
CCDS55 AALHSDSQDGHQDFDYIISFSYGLQGFC
130 140
389 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:57:28 2016 done: Fri Nov 4 02:57:28 2016
Total Scan time: 2.950 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]