FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4372, 727 aa
  1>>>pF1KB4372 727 - 727 aa - 727 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8780+/-0.00132; mu= 16.9963+/- 0.080
 mean_var=82.7804+/-16.657, 0's: 0 Z-trim(101.8): 68  B-trim: 2 in 1/48
 Lambda= 0.140965
 statistics sampled from 6614 (6662) to 6614 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.559), E-opt: 0.2 (0.205), width:  16
 Scan time:  2.820

The best scores are:                                      opt bits E(32554)
CCDS2202.1 GPD2 gene_id:2820|Hs108|chr2            ( 727) 4747 976.2       0


>>CCDS2202.1 GPD2 gene_id:2820|Hs108|chr2                 (727 aa)
 initn: 4747 init1: 4747 opt: 4747  Z-score: 5218.5  bits: 976.2 E(32554):    0
Smith-Waterman score: 4747; 99.9% identity (100.0% similar) in 727 aa overlap (1-727:1-727)

               10        20        30        40        50        60
pF1KB4 MAFQKAVKGTILVGGGALATVLGLSQFAHYRRKQMNLAYVKAADCISEPVNREPPSREAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MAFQKAVKGTILVGGGALATVLGLSQFAHYRRKQMNLAYVKAADCISEPVNREPPSREAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LLTLQNTSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 YLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPVYKWWQLPYYWVGIKLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 YLQKAIMKLDIEQYRMVKEALHERANLLEIAPHLSAPLPIMLPVYKWWQLPYYWVGIKLY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 DLVAGSNCLKSSYVLSKSRALEHFPMLQKDKLVGAIVYYDGQHNDARMNLAIALTAARYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DLVAGSNCLKSSYVLSKSRALEHFPMLQKDKLVGAIVYYDGQHNDARMNLAIALTAARYG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 AATANYMEVVSLLKKTDPQTGKVHVSGARCKDVLTGQEFDVRAKCVINATGPFTDSVRKM
       :::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS22 AATANYMEVVSLLKKTDPQTGKVRVSGARCKDVLTGQEFDVRAKCVINATGPFTDSVRKM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 DDKDAAAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQKMTIAGTTDTPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DDKDAAAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQKMTIAGTTDTPTD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 VTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTDPKSADTQSISRNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTDPKSADTQSISRNH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 VVDISESGLITIAGGKWTTYRSMAEDTINAAVKTHNLKAGPSRTVGLFLQGGKDWSPTLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VVDISESGLITIAGGKWTTYRSMAEDTINAAVKTHNLKAGPSRTVGLFLQGGKDWSPTLY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 IRLVQDYGLESEVAQHLAATYGDKAFEVAKMASVTGKRWPIVGVRLVSEFPYIEAEVKYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 IRLVQDYGLESEVAQHLAATYGDKAFEVAKMASVTGKRWPIVGVRLVSEFPYIEAEVKYG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 IKEYACTAVDMISRRTRLAFLNVQAAEEALPRIVELMGRELNWDDYKKQEQLETARKFLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 IKEYACTAVDMISRRTRLAFLNVQAAEEALPRIVELMGRELNWDDYKKQEQLETARKFLY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 YEMGYKSRSEQLTDRSEISLLPSDIDRYKKRFHKFDADQKGFITIVDVQRVLESINVQMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 YEMGYKSRSEQLTDRSEISLLPSDIDRYKKRFHKFDADQKGFITIVDVQRVLESINVQMD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 ENTLHEILNEVDLNKNGQVELNEFLQLMSAIQKGRVSGSRLAILMKTAEENLDRRVPIPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 ENTLHEILNEVDLNKNGQVELNEFLQLMSAIQKGRVSGSRLAILMKTAEENLDRRVPIPV
              670       680       690       700       710       720

              
pF1KB4 DRSCGGL
       :::::::
CCDS22 DRSCGGL
              




727 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:50:12 2016 done: Mon Nov  7 19:50:13 2016
 Total Scan time:  2.820 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]