Result of FASTA (omim) for
pF1KB4295
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4295, 237 aa
1>>>pF1KB4295 237 - 237 aa - 237 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2450+/-0.000444; mu= 16.1580+/- 0.028
mean_var=100.1928+/-19.832, 0's: 0 Z-trim(113.5): 435 B-trim: 566 in 1/52
Lambda= 0.128131
statistics sampled from 22433 (22924) to 22433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.269), width: 16
Scan time: 6.540
The best scores are: opt bits E(85289)
NP_001265596 (OMIM: 201000,606144) ras-related pro ( 237) 1534 293.8 1.7e-79
NP_899050 (OMIM: 201000,606144) ras-related protei ( 237) 1534 293.8 1.7e-79
NP_001265595 (OMIM: 201000,606144) ras-related pro ( 237) 1534 293.8 1.7e-79
NP_001265597 (OMIM: 201000,606144) ras-related pro ( 237) 1534 293.8 1.7e-79
NP_057361 (OMIM: 201000,606144) ras-related protei ( 237) 1534 293.8 1.7e-79
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225) 452 93.7 2.7e-19
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227) 452 93.8 2.8e-19
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219) 441 91.7 1.1e-18
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219) 441 91.7 1.1e-18
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220) 438 91.1 1.6e-18
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220) 438 91.1 1.6e-18
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201) 437 90.9 1.7e-18
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203) 428 89.3 5.5e-18
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203) 428 89.3 5.5e-18
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203) 428 89.3 5.5e-18
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203) 428 89.3 5.5e-18
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219) 426 88.9 7.5e-18
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 419 87.6 1.8e-17
NP_004628 (OMIM: 600882,602298) ras-related protei ( 207) 410 85.9 5.6e-17
NP_001020471 (OMIM: 616448) ras-related protein Ra ( 244) 406 85.3 1e-16
XP_011528847 (OMIM: 605662) PREDICTED: ras-related ( 341) 407 85.6 1.2e-16
XP_005245626 (OMIM: 603949) PREDICTED: ras-related ( 203) 404 84.8 1.2e-16
NP_001129134 (OMIM: 603949) ras-related protein Ra ( 203) 404 84.8 1.2e-16
NP_003920 (OMIM: 603949) ras-related protein Rab-7 ( 203) 404 84.8 1.2e-16
XP_005245628 (OMIM: 603949) PREDICTED: ras-related ( 203) 404 84.8 1.2e-16
XP_005245627 (OMIM: 603949) PREDICTED: ras-related ( 203) 404 84.8 1.2e-16
XP_016884594 (OMIM: 605662) PREDICTED: ras-related ( 306) 405 85.2 1.4e-16
NP_004905 (OMIM: 605662) ras-related protein Rab-3 ( 333) 405 85.2 1.5e-16
XP_005261916 (OMIM: 605662) PREDICTED: ras-related ( 357) 405 85.3 1.5e-16
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 401 84.3 1.7e-16
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218) 398 83.7 2.7e-16
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212) 396 83.4 3.4e-16
NP_002860 (OMIM: 179513) ras-related protein Rab-6 ( 208) 395 83.2 3.9e-16
NP_057661 (OMIM: 615852) ras-related protein Rab-6 ( 208) 395 83.2 3.9e-16
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 394 83.0 4.3e-16
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 393 82.8 5e-16
XP_005269108 (OMIM: 179514) PREDICTED: ras-related ( 215) 393 82.8 5.1e-16
NP_002859 (OMIM: 179514) ras-related protein Rab-5 ( 215) 393 82.8 5.1e-16
NP_001238965 (OMIM: 179514) ras-related protein Ra ( 215) 393 82.8 5.1e-16
XP_005269109 (OMIM: 179514) PREDICTED: ras-related ( 215) 393 82.8 5.1e-16
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216) 393 82.8 5.1e-16
NP_057454 (OMIM: 300285) ras-related protein Rab-9 ( 201) 392 82.6 5.5e-16
NP_942599 (OMIM: 179513) ras-related protein Rab-6 ( 208) 391 82.4 6.4e-16
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256) 391 82.5 7.4e-16
XP_011523393 (OMIM: 604037) PREDICTED: ras-related ( 216) 390 82.3 7.5e-16
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216) 390 82.3 7.5e-16
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216) 390 82.3 7.5e-16
NP_958842 (OMIM: 604037) ras-related protein Rab-5 ( 216) 390 82.3 7.5e-16
NP_001238968 (OMIM: 604037) ras-related protein Ra ( 249) 390 82.3 8.3e-16
NP_004153 (OMIM: 179512) ras-related protein Rab-5 ( 215) 389 82.1 8.5e-16
>>NP_001265596 (OMIM: 201000,606144) ras-related protein (237 aa)
initn: 1534 init1: 1534 opt: 1534 Z-score: 1548.0 bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
130 140 150 160 170 180
190 200 210 220 230
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
190 200 210 220 230
>>NP_899050 (OMIM: 201000,606144) ras-related protein Ra (237 aa)
initn: 1534 init1: 1534 opt: 1534 Z-score: 1548.0 bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
130 140 150 160 170 180
190 200 210 220 230
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
190 200 210 220 230
>>NP_001265595 (OMIM: 201000,606144) ras-related protein (237 aa)
initn: 1534 init1: 1534 opt: 1534 Z-score: 1548.0 bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
130 140 150 160 170 180
190 200 210 220 230
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
190 200 210 220 230
>>NP_001265597 (OMIM: 201000,606144) ras-related protein (237 aa)
initn: 1534 init1: 1534 opt: 1534 Z-score: 1548.0 bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
130 140 150 160 170 180
190 200 210 220 230
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
190 200 210 220 230
>>NP_057361 (OMIM: 201000,606144) ras-related protein Ra (237 aa)
initn: 1534 init1: 1534 opt: 1534 Z-score: 1548.0 bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
130 140 150 160 170 180
190 200 210 220 230
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
190 200 210 220 230
>>NP_001304844 (OMIM: 612829) ras-related protein Rab-3C (225 aa)
initn: 442 init1: 285 opt: 452 Z-score: 467.3 bits: 93.7 E(85289): 2.7e-19
Smith-Waterman score: 452; 34.0% identity (77.1% similar) in 188 aa overlap (3-189:22-209)
10 20 30 40
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKT
..... .:....::..:::.:.. :: ::. . .:
NP_001 MELYGKMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVST
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 IGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVS
.:.:: . . :.. ..:..:::::::.. .:: ::::::.. .:... :..:::.::.
NP_001 VGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 SWREKVVAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNE
.: .. . : ..:: :: :. :. :..:... :...: ..:..::.:...::..
NP_001 DWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB4 VFKYLAEKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPN
.:. :.. .:..... :: .: ...:
NP_001 TFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC
190 200 210 220
>>NP_612462 (OMIM: 612829) ras-related protein Rab-3C is (227 aa)
initn: 442 init1: 285 opt: 452 Z-score: 467.2 bits: 93.8 E(85289): 2.8e-19
Smith-Waterman score: 452; 34.0% identity (77.1% similar) in 188 aa overlap (3-189:24-211)
10 20 30
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK
..... .:....::..:::.:.. :: ::. .
NP_612 MRHEAPMQMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB4 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEA
.:.:.:: . . :.. ..:..:::::::.. .:: ::::::.. .:... :..:::.:
NP_612 STVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB4 VSSWREKVVAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNV
:..: .. . : ..:: :: :. :. :..:... :...: ..:..::.:...::
NP_612 VQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 NEVFKYLAEKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLR
...:. :.. .:..... :: .: ...:
NP_612 KQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC
190 200 210 220
220 230
pF1KB4 PNKQRTKKNRNPFSSCSIP
>>XP_016857447 (OMIM: 179510) PREDICTED: ras-related pro (219 aa)
initn: 440 init1: 308 opt: 441 Z-score: 456.4 bits: 91.7 E(85289): 1.1e-18
Smith-Waterman score: 441; 33.5% identity (74.5% similar) in 188 aa overlap (3-189:16-203)
10 20 30 40
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL
..... .:....::..:::.:.. :: :: . .:.:.::
XP_016 MASVTDGKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV
. . ... :.:..:::::::.. .:: ::::::.. .:... :..:::.::..: ..
XP_016 VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 VAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA
. : ..:: :: :. .. . .:... ::..: . :...:.::...: ..:. :.
XP_016 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB4 EKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKK
. .:..... :: . ::.:
XP_016 DAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC
190 200 210
>>NP_002858 (OMIM: 179510) ras-related protein Rab-3B [H (219 aa)
initn: 440 init1: 308 opt: 441 Z-score: 456.4 bits: 91.7 E(85289): 1.1e-18
Smith-Waterman score: 441; 33.5% identity (74.5% similar) in 188 aa overlap (3-189:16-203)
10 20 30 40
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL
..... .:....::..:::.:.. :: :: . .:.:.::
NP_002 MASVTDGKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV
. . ... :.:..:::::::.. .:: ::::::.. .:... :..:::.::..: ..
NP_002 VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 VAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA
. : ..:: :: :. .. . .:... ::..: . :...:.::...: ..:. :.
NP_002 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB4 EKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKK
. .:..... :: . ::.:
NP_002 DAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC
190 200 210
>>NP_002857 (OMIM: 179490) ras-related protein Rab-3A [H (220 aa)
initn: 400 init1: 298 opt: 438 Z-score: 453.4 bits: 91.1 E(85289): 1.6e-18
Smith-Waterman score: 438; 35.3% identity (75.5% similar) in 184 aa overlap (3-184:16-199)
10 20 30 40
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL
..... .:....::..:::.:.. :: :: . .:.:.::
NP_002 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV
. : ::. ..:..:::::::.. .:: ::::::.. .:... :..:::.::..: ..
NP_002 VKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 VAEVGDIPTVL-VQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA
. : :: : :: :. :. ...:... :: .: ..:...:.:...::...:. :.
NP_002 KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB4 EKYLQKLKQQI-AEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTK
. .:..... . :: .:
NP_002 DVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC
190 200 210 220
237 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:47:12 2016 done: Sat Nov 5 05:47:13 2016
Total Scan time: 6.540 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]