Result of FASTA (ccds) for
pF1KB4295
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4295, 237 aa
1>>>pF1KB4295 237 - 237 aa - 237 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6321+/-0.00106; mu= 13.5117+/- 0.064
mean_var=89.5786+/-18.193, 0's: 0 Z-trim(106.3): 210 B-trim: 268 in 1/50
Lambda= 0.135510
statistics sampled from 8689 (8915) to 8689 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.274), width: 16
Scan time: 2.200
The best scores are: opt bits E(32554)
CCDS4962.1 RAB23 gene_id:51715|Hs108|chr6 ( 237) 1534 309.7 1.1e-84
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5 ( 227) 452 98.2 4.9e-21
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1 ( 219) 441 96.0 2.1e-20
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19 ( 220) 438 95.4 3.2e-20
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 437 95.2 3.4e-20
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 428 93.4 1.2e-19
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19 ( 219) 426 93.1 1.6e-19
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 419 91.7 4e-19
CCDS73011.1 RAB7B gene_id:338382|Hs108|chr1 ( 199) 412 90.3 1e-18
CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 ( 207) 410 89.9 1.4e-18
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 ( 244) 406 89.2 2.6e-18
CCDS1459.1 RAB29 gene_id:8934|Hs108|chr1 ( 203) 404 88.7 3e-18
CCDS13805.1 RAB36 gene_id:9609|Hs108|chr22 ( 333) 405 89.1 3.8e-18
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 401 88.2 4.5e-18
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 ( 218) 398 87.6 7.2e-18
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 396 87.2 9.2e-18
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 395 87.0 1e-17
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 ( 208) 395 87.0 1e-17
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 394 86.8 1.2e-17
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 393 86.6 1.4e-17
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 ( 215) 393 86.6 1.4e-17
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14 ( 216) 393 86.6 1.4e-17
CCDS14515.1 RAB9B gene_id:51209|Hs108|chrX ( 201) 392 86.4 1.5e-17
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 391 86.2 1.8e-17
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 391 86.3 2.1e-17
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 ( 216) 390 86.0 2.1e-17
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 ( 249) 390 86.1 2.4e-17
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 ( 215) 389 85.8 2.4e-17
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 ( 216) 386 85.2 3.6e-17
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7 ( 217) 386 85.2 3.6e-17
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 383 84.6 5.2e-17
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 380 84.1 7.9e-17
CCDS7814.1 RRAS2 gene_id:22800|Hs108|chr11 ( 204) 379 83.9 9e-17
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3 ( 212) 379 83.9 9.2e-17
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 ( 225) 377 83.5 1.3e-16
CCDS44803.1 CRACR2A gene_id:84766|Hs108|chr12 ( 731) 382 84.9 1.6e-16
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX ( 213) 374 82.9 1.8e-16
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 ( 190) 372 82.5 2.2e-16
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1 ( 218) 372 82.5 2.4e-16
CCDS3747.1 RAB33B gene_id:83452|Hs108|chr4 ( 229) 370 82.1 3.3e-16
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10 ( 206) 369 81.9 3.5e-16
CCDS41413.1 RAB25 gene_id:57111|Hs108|chr1 ( 213) 368 81.7 4.1e-16
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 367 81.5 4.7e-16
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 366 81.3 5.5e-16
CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2 ( 212) 364 80.9 7.1e-16
CCDS14156.1 RAB9A gene_id:9367|Hs108|chrX ( 201) 363 80.7 7.8e-16
CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11 ( 217) 361 80.4 1.1e-15
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19 ( 213) 356 79.4 2.1e-15
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 355 79.2 2.2e-15
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 ( 215) 355 79.2 2.4e-15
>>CCDS4962.1 RAB23 gene_id:51715|Hs108|chr6 (237 aa)
initn: 1534 init1: 1534 opt: 1534 Z-score: 1634.1 bits: 309.7 E(32554): 1.1e-84
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
130 140 150 160 170 180
190 200 210 220 230
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
190 200 210 220 230
>>CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5 (227 aa)
initn: 442 init1: 285 opt: 452 Z-score: 491.1 bits: 98.2 E(32554): 4.9e-21
Smith-Waterman score: 452; 34.0% identity (77.1% similar) in 188 aa overlap (3-189:24-211)
10 20 30
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK
..... .:....::..:::.:.. :: ::. .
CCDS39 MRHEAPMQMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB4 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEA
.:.:.:: . . :.. ..:..:::::::.. .:: ::::::.. .:... :..:::.:
CCDS39 STVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB4 VSSWREKVVAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNV
:..: .. . : ..:: :: :. :. :..:... :...: ..:..::.:...::
CCDS39 VQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 NEVFKYLAEKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLR
...:. :.. .:..... :: .: ...:
CCDS39 KQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC
190 200 210 220
220 230
pF1KB4 PNKQRTKKNRNPFSSCSIP
>>CCDS560.1 RAB3B gene_id:5865|Hs108|chr1 (219 aa)
initn: 440 init1: 308 opt: 441 Z-score: 479.7 bits: 96.0 E(32554): 2.1e-20
Smith-Waterman score: 441; 33.5% identity (74.5% similar) in 188 aa overlap (3-189:16-203)
10 20 30 40
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL
..... .:....::..:::.:.. :: :: . .:.:.::
CCDS56 MASVTDGKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV
. . ... :.:..:::::::.. .:: ::::::.. .:... :..:::.::..: ..
CCDS56 VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 VAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA
. : ..:: :: :. .. . .:... ::..: . :...:.::...: ..:. :.
CCDS56 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB4 EKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKK
. .:..... :: . ::.:
CCDS56 DAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC
190 200 210
>>CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19 (220 aa)
initn: 400 init1: 298 opt: 438 Z-score: 476.5 bits: 95.4 E(32554): 3.2e-20
Smith-Waterman score: 438; 35.3% identity (75.5% similar) in 184 aa overlap (3-184:16-199)
10 20 30 40
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL
..... .:....::..:::.:.. :: :: . .:.:.::
CCDS12 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV
. : ::. ..:..:::::::.. .:: ::::::.. .:... :..:::.::..: ..
CCDS12 VKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 VAEVGDIPTVL-VQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA
. : :: : :: :. :. ...:... :: .: ..:...:.:...::...:. :.
CCDS12 KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB4 EKYLQKLKQQI-AEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTK
. .:..... . :: .:
CCDS12 DVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC
190 200 210 220
>>CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 (201 aa)
initn: 401 init1: 401 opt: 437 Z-score: 476.0 bits: 95.2 E(32554): 3.4e-20
Smith-Waterman score: 437; 34.2% identity (74.7% similar) in 190 aa overlap (2-191:1-190)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
. .:.. .:....:...:::::.. :. . :. .: :::::: : ...: : :.:
CCDS41 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKL
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
..:::::::.: .::..::::... ..:...:. ::: :. : ... . :. .::
CCDS41 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
:: : . . ...:.: .: .. .....::.::..::.:.:. ..: :. :...:..
CCDS41 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ
120 130 140 150 160 170
190 200 210 220 230
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
. ... :.
CCDS41 QQQQQNDVVKLTKNSKRKKRCC
180 190 200
>>CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 (203 aa)
initn: 428 init1: 325 opt: 428 Z-score: 466.4 bits: 93.4 E(32554): 1.2e-19
Smith-Waterman score: 428; 36.9% identity (73.9% similar) in 176 aa overlap (1-175:1-176)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
: ::.. .:.:..::..:::. ...:. .:.: ::::::. . ...: : :.:
CCDS82 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGD-IPTVLV
..:::::::.: .::..:::.:.: .:... : .:::. . : ... ... . ::::
CCDS82 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 QNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAE
::::: . .....:: ... . . .::.::. ::...: :: . ... .:
CCDS82 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 DPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
CCDS82 NNVSSPLPGEGKSISYLTCCNFN
190 200
>>CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19 (219 aa)
initn: 403 init1: 278 opt: 426 Z-score: 463.9 bits: 93.1 E(32554): 1.6e-19
Smith-Waterman score: 426; 33.9% identity (73.5% similar) in 189 aa overlap (3-190:16-202)
10 20 30 40
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL
..... .:....::..:::.:.. :: :: . .:.:.::
CCDS12 MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV
. . .:. ..:..:::::::.. .:: ::::::.. .:... ...::: ::..: ..
CCDS12 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 VAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA
. : ..:: :: :: :. . :... :: : ..:...:.::..::..::. :.
CCDS12 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB4 EKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKK
. .:..... .: . .:..:
CCDS12 DVICEKMNESL--EPSSSSGSNGKGPAVGDAPAPQPSSCSC
190 200 210
>>CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 (203 aa)
initn: 410 init1: 282 opt: 419 Z-score: 456.9 bits: 91.7 E(32554): 4e-19
Smith-Waterman score: 419; 37.4% identity (76.1% similar) in 163 aa overlap (11-172:10-172)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
:....:...:::. .: :. . :.. : .:::.:: : .... . ..:
CCDS10 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKL
10 20 30 40 50
70 80 90 100 110
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLV
..:::::::.: .:: ::::::.. .::.. ::..::: ...: ... ... . .:.
CCDS10 QVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 QNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAE
:: :. ...:.:. ::.. .::..::.: ..::.:.:. ::. : :
CCDS10 GNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 DPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
CCDS10 NGNKPPSTDLKTCDKKNTNKCSLG
180 190 200
>>CCDS73011.1 RAB7B gene_id:338382|Hs108|chr1 (199 aa)
initn: 334 init1: 286 opt: 412 Z-score: 449.6 bits: 90.3 E(32554): 1e-18
Smith-Waterman score: 412; 35.9% identity (76.6% similar) in 184 aa overlap (7-186:6-186)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
.: .:...:: .:::.:....: . : ..:. :.:...: . : ..: ..:
CCDS73 MNPRKKVDLKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKL
10 20 30 40 50
70 80 90 100 110
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDI----PT
..:::.:::.: ......:.:...:.:.:..:: :::::.. :: :.:.. . :
CCDS73 QIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 VLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQ
::. ::::: : . . .: :.. .. . ....:.:.:.:: ..:..:: . :.. :.
CCDS73 VLLGNKIDLADRK-VPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRY-QS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 IAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSI
: :. .::.:
CCDS73 ILEN-HLTESIKLSPDQSRSRCC
180 190
>>CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 (207 aa)
initn: 396 init1: 331 opt: 410 Z-score: 447.3 bits: 89.9 E(32554): 1.4e-18
Smith-Waterman score: 410; 35.5% identity (80.2% similar) in 172 aa overlap (7-172:6-176)
10 20 30 40 50 60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
.: .:....:...:::.:....: . :...:: :::.::: ....:.:. : .
CCDS30 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTM
10 20 30 40 50
70 80 90 100 110
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-----DIP
..:::::::.:... :.::::. :::::..: ..:....:::.. . ... ..:
CCDS30 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 TVLVQNKIDLLDDSCIKNEEAEALA-KRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLK
:.. ::::: .. . ...:.: .. .. ...::.:: .::...:. .:.. :..
CCDS30 FVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 QQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSC
CCDS30 EVELYNEFPEPIKLDKNDRAKASAESCSC
180 190 200
237 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:47:11 2016 done: Sat Nov 5 05:47:12 2016
Total Scan time: 2.200 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]