FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4280, 271 aa
  1>>>pF1KB4280 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1045+/-0.000712; mu= 15.7051+/- 0.043
 mean_var=61.2097+/-12.297, 0's: 0 Z-trim(109.0): 7  B-trim: 0 in 0/49
 Lambda= 0.163932
 statistics sampled from 10580 (10586) to 10580 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.325), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS13770.1 COMT gene_id:1312|Hs108|chr22          ( 271) 1830 440.9 4.4e-124
CCDS46663.1 COMT gene_id:1312|Hs108|chr22          ( 221) 1485 359.3 1.3e-99
CCDS44668.1 LRTOMT gene_id:220074|Hs108|chr11      ( 291)  569 142.7 2.8e-34


>>CCDS13770.1 COMT gene_id:1312|Hs108|chr22               (271 aa)
 initn: 1830 init1: 1830 opt: 1830  Z-score: 2341.2  bits: 440.9 E(32554): 4.4e-124
Smith-Waterman score: 1830; 99.6% identity (100.0% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KB4 MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDIIPQLKKKY
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS13 YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE
              190       200       210       220       230       240

              250       260       270 
pF1KB4 CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
       :::::::::::::::::::::::::::::::
CCDS13 CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
              250       260       270 

>>CCDS46663.1 COMT gene_id:1312|Hs108|chr22               (221 aa)
 initn: 1485 init1: 1485 opt: 1485  Z-score: 1901.6  bits: 359.3 E(32554): 1.3e-99
Smith-Waterman score: 1485; 99.5% identity (100.0% similar) in 221 aa overlap (51-271:1-221)

               30        40        50        60        70        80
pF1KB4 VLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAID
                                     ::::::::::::::::::::::::::::::
CCDS46                               MGDTKEQRILNHVLQHAEPGNAQSVLEAID
                                             10        20        30

               90       100       110       120       130       140
pF1KB4 TYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIE
               40        50        60        70        80        90

              150       160       170       180       190       200
pF1KB4 INPDCAAITQRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPD
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS46 INPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPD
              100       110       120       130       140       150

              210       220       230       240       250       260
pF1KB4 TLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKA
              160       170       180       190       200       210

              270 
pF1KB4 IYKGPGSEAGP
       :::::::::::
CCDS46 IYKGPGSEAGP
              220 

>>CCDS44668.1 LRTOMT gene_id:220074|Hs108|chr11           (291 aa)
 initn: 531 init1: 277 opt: 569  Z-score: 729.0  bits: 142.7 E(32554): 2.8e-34
Smith-Waterman score: 569; 36.3% identity (67.6% similar) in 259 aa overlap (10-266:37-291)

                                    10        20        30         
pF1KB4                      MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWN
                                     : .:  : :.:.::.  ::.   :      
CCDS44 KRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLLV----R
         10        20        30        40        50        60      

      40        50        60        70        80        90         
pF1KB4 EFILQPIHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKI
         .:. ... : :   :.: ...:: :: ::.   .: ..: .  . :.  ..:  ::.:
CCDS44 TVLLRSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQI
             70        80        90       100       110       120  

     100       110       120       130       140       150         
pF1KB4 VDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGMK
       .  ...:. :. .::::.:::::.. .:: : ::.::.:.: .:  ::...... .::. 
CCDS44 LMRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFD
            130       140       150       160       170       180  

     160        170       180       190       200       210        
pF1KB4 DK-VTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLA
       .. : :.::.:.:.:: :. .:...  :.:.: :    :: :  :::  .::  :...::
CCDS44 EHMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATVLA
            190       200       210       220       230       240  

      220       230       240        250       260       270 
pF1KB4 DNVICPGAPDFLAHVRGSSCFECT-HYQSFLEYREVVDGLEKAIYKGPGSEAGP
       :.:. :::: :: .... . ..:  :. .. ..  . ::. .  : :::     
CCDS44 DHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG     
            250       260       270       280       290      




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:56:18 2016 done: Fri Nov  4 02:56:18 2016
 Total Scan time:  2.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]