Result of FASTA (ccds) for
pF1KB4277
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4277, 425 aa
1>>>pF1KB4277 425 - 425 aa - 425 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6642+/-0.00109; mu= 10.1998+/- 0.064
mean_var=121.6460+/-26.084, 0's: 0 Z-trim(106.7): 162 B-trim: 355 in 1/50
Lambda= 0.116285
statistics sampled from 8954 (9154) to 8954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.281), width: 16
Scan time: 2.960
The best scores are: opt bits E(32554)
CCDS366.1 RBBP4 gene_id:5928|Hs108|chr1 ( 425) 2929 503.0 2.2e-142
CCDS44105.1 RBBP4 gene_id:5928|Hs108|chr1 ( 424) 2912 500.2 1.6e-141
CCDS44106.1 RBBP4 gene_id:5928|Hs108|chr1 ( 390) 2698 464.2 9.5e-131
CCDS14179.1 RBBP7 gene_id:5931|Hs108|chrX ( 425) 2640 454.5 8.7e-128
CCDS56598.1 RBBP7 gene_id:5931|Hs108|chrX ( 469) 2629 452.7 3.4e-127
>>CCDS366.1 RBBP4 gene_id:5928|Hs108|chr1 (425 aa)
initn: 2929 init1: 2929 opt: 2929 Z-score: 2669.7 bits: 503.0 E(32554): 2.2e-142
Smith-Waterman score: 2929; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)
10 20 30 40 50 60
pF1KB4 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP
370 380 390 400 410 420
pF1KB4 EGQGS
:::::
CCDS36 EGQGS
>>CCDS44105.1 RBBP4 gene_id:5928|Hs108|chr1 (424 aa)
initn: 2892 init1: 2892 opt: 2912 Z-score: 2654.3 bits: 500.2 E(32554): 1.6e-141
Smith-Waterman score: 2912; 99.8% identity (99.8% similar) in 425 aa overlap (1-425:1-424)
10 20 30 40 50 60
pF1KB4 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MADKEA-FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB4 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB4 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB4 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP
360 370 380 390 400 410
pF1KB4 EGQGS
:::::
CCDS44 EGQGS
420
>>CCDS44106.1 RBBP4 gene_id:5928|Hs108|chr1 (390 aa)
initn: 2698 init1: 2698 opt: 2698 Z-score: 2460.8 bits: 464.2 E(32554): 9.5e-131
Smith-Waterman score: 2698; 100.0% identity (100.0% similar) in 390 aa overlap (36-425:1-390)
10 20 30 40 50 60
pF1KB4 AAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHR
::::::::::::::::::::::::::::::
CCDS44 MTHALEWPSLTAQWLPDVTRPEGKDFSIHR
10 20 30
70 80 90 100 110 120
pF1KB4 LVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB4 EVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSW
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB4 NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB4 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB4 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB4 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQGS
340 350 360 370 380 390
>>CCDS14179.1 RBBP7 gene_id:5931|Hs108|chrX (425 aa)
initn: 2739 init1: 2592 opt: 2640 Z-score: 2407.7 bits: 454.5 E(32554): 8.7e-128
Smith-Waterman score: 2640; 89.2% identity (96.5% similar) in 426 aa overlap (1-425:1-425)
10 20 30 40 50 60
pF1KB4 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
::.:: :.:.:::::::::::::::::::::::::::::.:::::.::::.::.:::::
CCDS14 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
...: :::::::::::::::.: :..::::::::::: ::.::::::::::.:::: :::
CCDS14 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
::::::::::::::::: ::::::::::::::::::::.:::::::::::::::::::::
CCDS14 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
:::::: ::::::::::::::.:::::.: :::::.::::.:::::.::::::.::::::
CCDS14 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB4 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
::::::::::::::::::::.:::::: ::::::::::::::::::::::::::::::::
CCDS14 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB4 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
:::::::::::.:::::::::::.::::::::::::::::::::::::::::::: ::::
CCDS14 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB4 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP
::::::::::::::::::::::::::::::::::::::::.:::::::::::. . ...
CCDS14 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSE
360 370 380 390 400 410
pF1KB4 -EGQGS
:::::
CCDS14 LEGQGS
420
>>CCDS56598.1 RBBP7 gene_id:5931|Hs108|chrX (469 aa)
initn: 2739 init1: 2592 opt: 2629 Z-score: 2397.1 bits: 452.7 E(32554): 3.4e-127
Smith-Waterman score: 2629; 89.7% identity (96.9% similar) in 419 aa overlap (8-425:51-469)
10 20 30
pF1KB4 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMT
:.:.::::::::::::::::::::::::::
CCDS56 QACGLLLHVHLSSRLGRAAPVRTGRHLRTVFEDTVEERVINEEYKIWKKNTPFLYDLVMT
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB4 HALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASH
:::.:::::.::::.::.:::::...: :::::::::::::::.: :..:::::::::::
CCDS56 HALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASH
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB4 YDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKH
::.::::::::::.:::: :::::::::::::::::::: :::::::::::::::::::
CCDS56 CDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKH
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB4 PSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVV
:.::::::::::::::::::::::::::: ::::::::::::::.:::::.: :::::.:
CCDS56 PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB4 DAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN
:::.:::::.::::::.::::::::::::::::::::::::::.:::::: :::::::::
CCDS56 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB4 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG
::::::::::::::::::::::::::::::::::.:::::::::::.:::::::::::::
CCDS56 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB4 TDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS56 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN
390 400 410 420 430 440
400 410 420
pF1KB4 IMQVWQMAENIYNDEDPEGSVDP-EGQGS
:::.:::::::::::. . ... :::::
CCDS56 IMQIWQMAENIYNDEESDVTTSELEGQGS
450 460
425 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:55:09 2016 done: Fri Nov 4 22:55:09 2016
Total Scan time: 2.960 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]