FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4244, 273 aa
  1>>>pF1KB4244 273 - 273 aa - 273 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4527+/-0.000322; mu= 14.9577+/- 0.020
 mean_var=72.4545+/-14.368, 0's: 0 Z-trim(116.2): 5  B-trim: 162 in 1/53
 Lambda= 0.150675
 statistics sampled from 27251 (27253) to 27251 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.32), width:  16
 Scan time:  7.210

The best scores are:                                      opt bits E(85289)
NP_000890 (OMIM: 145250,184745,611664,616697) kit  ( 273) 1778 395.3 6.6e-110
NP_003985 (OMIM: 145250,184745,611664,616697) kit  ( 245) 1127 253.7 2.4e-67


>>NP_000890 (OMIM: 145250,184745,611664,616697) kit liga  (273 aa)
 initn: 1778 init1: 1778 opt: 1778  Z-score: 2094.2  bits: 395.3 E(85289): 6.6e-110
Smith-Waterman score: 1778; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KB4 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
              190       200       210       220       230       240

              250       260       270   
pF1KB4 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
       :::::::::::::::::::::::::::::::::
NP_000 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
              250       260       270   

>>NP_003985 (OMIM: 145250,184745,611664,616697) kit liga  (245 aa)
 initn: 1582 init1: 1127 opt: 1127  Z-score: 1330.1  bits: 253.7 E(85289): 2.4e-67
Smith-Waterman score: 1529; 89.4% identity (89.4% similar) in 273 aa overlap (1-273:1-245)

               10        20        30        40        50        60
pF1KB4 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
NP_003 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKG------
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB4 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
                             ::::::::::::::::::::::::::::::::::::::
NP_003 ----------------------KAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
                                180       190       200       210  

              250       260       270   
pF1KB4 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
       :::::::::::::::::::::::::::::::::
NP_003 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
            220       230       240     




273 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:55:44 2016 done: Fri Nov  4 02:55:46 2016
 Total Scan time:  7.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]