FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4244, 273 aa
  1>>>pF1KB4244 273 - 273 aa - 273 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9153+/-0.000744; mu= 12.1577+/- 0.045
 mean_var=69.5594+/-13.685, 0's: 0 Z-trim(108.8): 14  B-trim: 0 in 0/51
 Lambda= 0.153779
 statistics sampled from 10477 (10479) to 10477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.322), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS31868.1 KITLG gene_id:4254|Hs108|chr12         ( 273) 1778 403.1 1.1e-112
CCDS31867.1 KITLG gene_id:4254|Hs108|chr12         ( 245) 1127 258.6 3.1e-69


>>CCDS31868.1 KITLG gene_id:4254|Hs108|chr12              (273 aa)
 initn: 1778 init1: 1778 opt: 1778  Z-score: 2136.3  bits: 403.1 E(32554): 1.1e-112
Smith-Waterman score: 1778; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KB4 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
              190       200       210       220       230       240

              250       260       270   
pF1KB4 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
       :::::::::::::::::::::::::::::::::
CCDS31 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
              250       260       270   

>>CCDS31867.1 KITLG gene_id:4254|Hs108|chr12              (245 aa)
 initn: 1582 init1: 1127 opt: 1127  Z-score: 1356.5  bits: 258.6 E(32554): 3.1e-69
Smith-Waterman score: 1529; 89.4% identity (89.4% similar) in 273 aa overlap (1-273:1-245)

               10        20        30        40        50        60
pF1KB4 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MKKTQTWILTCIYLQLLLFNPLVKTEGICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDVLPSHCWISEMVVQLSDSLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKDSRVSVT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS31 KDLKKSFKSPEPRLFTPEEFFRIFNRSIDAFKDFVVASETSDCVVSSTLSPEKG------
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB4 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
                             ::::::::::::::::::::::::::::::::::::::
CCDS31 ----------------------KAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWKKR
                                180       190       200       210  

              250       260       270   
pF1KB4 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
       :::::::::::::::::::::::::::::::::
CCDS31 QPSLTRAVENIQINEEDNEISMLQEKEREFQEV
            220       230       240     




273 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:55:44 2016 done: Fri Nov  4 02:55:44 2016
 Total Scan time:  2.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]