FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4182, 356 aa
  1>>>pF1KB4182 356 - 356 aa - 356 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1991+/-0.000749; mu= 10.0676+/- 0.045
 mean_var=143.7404+/-29.500, 0's: 0 Z-trim(113.5): 6  B-trim: 302 in 2/52
 Lambda= 0.106976
 statistics sampled from 14150 (14155) to 14150 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.435), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS11695.1 CDC42EP4 gene_id:23580|Hs108|chr17     ( 356) 2351 373.7 1.3e-103


>>CCDS11695.1 CDC42EP4 gene_id:23580|Hs108|chr17          (356 aa)
 initn: 2351 init1: 2351 opt: 2351  Z-score: 1973.8  bits: 373.7 E(32554): 1.3e-103
Smith-Waterman score: 2351; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KB4 MPILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 QLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 EQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 GDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMG
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KB4 SHTTRDSSSLSSCTSGILEERSPAFRGPDRARAAVSRQPDKEFSFMDEEEEDEIRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SHTTRDSSSLSSCTSGILEERSPAFRGPDRARAAVSRQPDKEFSFMDEEEEDEIRV
              310       320       330       340       350      




356 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:53:08 2016 done: Fri Nov  4 02:53:08 2016
 Total Scan time:  3.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]