FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4144, 156 aa
  1>>>pF1KB4144 156 - 156 aa - 156 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7921+/-0.00096; mu= 7.1191+/- 0.058
 mean_var=142.9955+/-27.830, 0's: 0 Z-trim(110.5): 29  B-trim: 87 in 1/51
 Lambda= 0.107254
 statistics sampled from 11671 (11685) to 11671 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.359), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS5325.1 MAFK gene_id:7975|Hs108|chr7            ( 156)  950 157.5 3.1e-39
CCDS11793.1 MAFG gene_id:4097|Hs108|chr17          ( 162)  675 114.9 2.1e-26
CCDS13968.1 MAFF gene_id:23764|Hs108|chr22         ( 164)  618 106.1 9.5e-24
CCDS54528.1 MAFF gene_id:23764|Hs108|chr22         ( 135)  518 90.6 3.7e-19
CCDS13311.1 MAFB gene_id:9935|Hs108|chr20          ( 323)  380 69.6 1.9e-12
CCDS34955.1 MAFA gene_id:389692|Hs108|chr8         ( 353)  346 64.3 7.7e-11


>>CCDS5325.1 MAFK gene_id:7975|Hs108|chr7                 (156 aa)
 initn: 950 init1: 950 opt: 950  Z-score: 817.8  bits: 157.5 E(32554): 3.1e-39
Smith-Waterman score: 950; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)

               10        20        30        40        50        60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
               70        80        90       100       110       120

              130       140       150      
pF1KB4 VARGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
       ::::::::::::::::::::::::::::::::::::
CCDS53 VARGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
              130       140       150      

>>CCDS11793.1 MAFG gene_id:4097|Hs108|chr17               (162 aa)
 initn: 675 init1: 675 opt: 675  Z-score: 587.6  bits: 114.9 E(32554): 2.1e-26
Smith-Waterman score: 694; 75.0% identity (86.5% similar) in 156 aa overlap (1-142:1-156)

               10        20        30        40        50        60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
       :::  : :::::::.: :::.  :.:.:::.:::::::::::::.:::...:::::::::
CCDS11 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
       :::::::::.::::::::::.:..:::::::::: ::.::.:::::::::::::::::::
CCDS11 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
               70        80        90       100       110       120

                            130       140       150      
pF1KB4 VARGPVAPS--------------KVATTSVITIVKSTELSSTSVPFSAAS
       :::.::::.              :::.:::::::::              
CCDS11 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS        
              130       140       150       160          

>>CCDS13968.1 MAFF gene_id:23764|Hs108|chr22              (164 aa)
 initn: 608 init1: 608 opt: 618  Z-score: 539.9  bits: 106.1 E(32554): 9.5e-24
Smith-Waterman score: 618; 68.0% identity (88.0% similar) in 150 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
       :...:  .::::.:.: .::.: :::. :...::::::.:::::. ::::::::::::::
CCDS13 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
       :::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
CCDS13 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
               70        80        90       100       110       120

                130       140       150              
pF1KB4 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS        
       ::  :::.  . :: .:::::::::  :..                
CCDS13 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
                130       140       150       160    

>>CCDS54528.1 MAFF gene_id:23764|Hs108|chr22              (135 aa)
 initn: 508 init1: 508 opt: 518  Z-score: 457.4  bits: 90.6 E(32554): 3.7e-19
Smith-Waterman score: 518; 71.9% identity (89.3% similar) in 121 aa overlap (30-148:1-119)

               10        20        30        40        50        60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
                                    ...::::::.:::::. ::::::::::::::
CCDS54                              MGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
                                            10        20        30 

               70        80        90       100       110       120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
       :::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
CCDS54 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
              40        50        60        70        80        90 

                130       140       150              
pF1KB4 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS        
       ::  :::.  . :: .:::::::::  :..                
CCDS54 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
               100       110       120       130     

>>CCDS13311.1 MAFB gene_id:9935|Hs108|chr20               (323 aa)
 initn: 420 init1: 361 opt: 380  Z-score: 337.0  bits: 69.6 E(32554): 1.9e-12
Smith-Waterman score: 380; 51.9% identity (72.6% similar) in 135 aa overlap (2-128:185-319)

                                             10        20          
pF1KB4                              MTTNPKPN-KALKVKKEAGENAPV---LSDD
                                     :..: :. .:      :: :. :   .:::
CCDS13 LGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHATASATAAGGNGSVEDRFSDD
          160       170       180       190       200       210    

        30        40        50        60        70        80       
pF1KB4 ELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLKNRGYAASCRIKRVTQKEELERQRVELQ
       .::::::::::.::::.::.:: ::::.:::::::::: ::: ::: ::..:: ....: 
CCDS13 QLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLI
          220       230       240       250       260       270    

        90       100       110           120       130       140   
pF1KB4 QEVEKLARENSSMRLELDALRSKYEALQT--F--ARTVARGPVAPSKVATTSVITIVKST
       :.::.: .: : .  : :: . : : : .  :  : ... .: .:               
CCDS13 QQVEQLKQEVSRLARERDAYKVKCEKLANSGFREAGSTSDSPSSPEFFL           
          280       290       300       310       320              

           150      
pF1KB4 ELSSTSVPFSAAS

>>CCDS34955.1 MAFA gene_id:389692|Hs108|chr8              (353 aa)
 initn: 365 init1: 345 opt: 346  Z-score: 308.1  bits: 64.3 E(32554): 7.7e-11
Smith-Waterman score: 346; 60.4% identity (81.3% similar) in 91 aa overlap (24-114:227-317)

                      10        20        30        40        50   
pF1KB4        MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLK
                                     .:::.::::::::::..:::..:::: :::
CCDS34 AAHHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVRELNRQLRGFSKEEVIRLK
        200       210       220       230       240       250      

            60        70        80        90       100       110   
pF1KB4 QRRRTLKNRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEA
       :.:::::::::: :::.::: :.. :: .. .::..::.:  : . .  : :  . ::: 
CCDS34 QKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLEVGRLAKERDLYKEKYEK
        260       270       280       290       300       310      

           120       130       140       150      
pF1KB4 LQTFARTVARGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
       :                                          
CCDS34 LAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL      
        320       330       340       350         




156 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:28:41 2016 done: Thu Nov  3 21:28:41 2016
 Total Scan time:  1.870 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]