FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4051, 341 aa
  1>>>pF1KB4051 341 - 341 aa - 341 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.3595+/-0.0015; mu= -25.2457+/- 0.083
 mean_var=582.2034+/-140.177, 0's: 0 Z-trim(105.1): 71  B-trim: 513 in 1/51
 Lambda= 0.053154
 statistics sampled from 8202 (8220) to 8202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS274.1 PDIK1L gene_id:149420|Hs108|chr1         ( 341) 2242 187.5 1.3e-47
CCDS13024.2 STK35 gene_id:140901|Hs108|chr20       ( 534) 1532 133.3 4.5e-31


>>CCDS274.1 PDIK1L gene_id:149420|Hs108|chr1              (341 aa)
 initn: 2242 init1: 2242 opt: 2242  Z-score: 968.1  bits: 187.5 E(32554): 1.3e-47
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KB4 MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 KSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 FCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQTRLDTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 FCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQTRLDTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 DLEPTLKVADFGLSKVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 DLEPTLKVADFGLSKVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 FALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 FALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSM
              250       260       270       280       290       300

              310       320       330       340 
pF1KB4 NGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET
       :::::::::::::::::::::::::::::::::::::::::
CCDS27 NGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET
              310       320       330       340 

>>CCDS13024.2 STK35 gene_id:140901|Hs108|chr20            (534 aa)
 initn: 1491 init1: 527 opt: 1532  Z-score: 671.3  bits: 133.3 E(32554): 4.5e-31
Smith-Waterman score: 1532; 69.3% identity (87.0% similar) in 339 aa overlap (3-332:197-530)

                                           10        20        30  
pF1KB4                             MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSA
                                     :..:.:.:. :.::::::::::::  ...:
CCDS13 AAAARAMDPVAAEAPGEAFLARRRPEGGGGSARPRYSLLAEIGRGSYGVVYEAVAGRSGA
        170       180       190       200       210       220      

             40        50        60        70        80        90  
pF1KB4 RVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSS-
       ::::::::: ::::::::: :::::.:.: .: ::...:::.::..:..:.::::..:: 
CCDS13 RVAVKKIRCDAPENVELALAEFWALTSLKRRHQNVVQFEECVLQRNGLAQRMSHGNKSSQ
        230       240       250       260       270       280      

             100        110       120       130       140       150
pF1KB4 LYLQLVETSLKGE-IAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSS
       :::.::::::::: :    .   ::::::.::.:::.:.:.:::.:.  :: ::::::.:
CCDS13 LYLRLVETSLKGERILGYAEEPCYLWFVMEFCEGGDLNQYVLSRRPDPATNKSFMLQLTS
        290       300       310       320       330       340      

              160       170       180       190             200    
pF1KB4 ALAFLHKNQIIHRDLKPDNILISQTRLDTSDLEPTLKVADFGLSKVCSA------SGQNP
       :.::::::.:.:::::::::::.. :  :    : ::::::::::::..       :.. 
CCDS13 AIAFLHKNHIVHRDLKPDNILITE-RSGT----PILKVADFGLSKVCAGLAPRGKEGNQD
        350       360       370            380       390       400 

          210       220       230       240       250       260    
pF1KB4 EEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKE
       .. :.::: .::.:::.:::::::::::::::::::::::::::::.:::::::.:::::
CCDS13 NKNVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKE
             410       420       430       440       450       460 

          270       280       290        300       310       320   
pF1KB4 LLGSYVKQGTEIVPVGEALLENPKMELLIPVKKK-SMNGRMKQLIKEMLAANPQDRPDAF
       :::.:.::::::::::::::::::::: :: :.. ::.  .:::.:.:::::::::::::
CCDS13 LLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAF
             470       480       490       500       510       520 

           330       340 
pF1KB4 ELELRLVQIAFKDSSWET
       ::: :. :.         
CCDS13 ELETRMDQVTCAA     
             530         




341 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:22:54 2016 done: Thu Nov  3 21:22:55 2016
 Total Scan time:  2.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]