Result of FASTA (ccds) for
pF1KB4028
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4028, 561 aa
1>>>pF1KB4028 561 - 561 aa - 561 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6908+/-0.00103; mu= 15.5985+/- 0.061
mean_var=58.0380+/-11.428, 0's: 0 Z-trim(102.1): 20 B-trim: 3 in 1/51
Lambda= 0.168352
statistics sampled from 6806 (6811) to 6806 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.209), width: 16
Scan time: 2.570
The best scores are: opt bits E(32554)
CCDS5652.1 ASNS gene_id:440|Hs108|chr7 ( 561) 3783 927.6 0
CCDS55132.1 ASNS gene_id:440|Hs108|chr7 ( 540) 3625 889.3 0
CCDS55131.1 ASNS gene_id:440|Hs108|chr7 ( 478) 3164 777.3 0
>>CCDS5652.1 ASNS gene_id:440|Hs108|chr7 (561 aa)
initn: 3783 init1: 3783 opt: 3783 Z-score: 4960.1 bits: 927.6 E(32554): 0
Smith-Waterman score: 3783; 99.8% identity (99.8% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KB4 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 PIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 FAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 LPGHYEVLDLKPNGKVASVEMVKYHHCRDEPLHALYDNVEKLFPGFEIETVKNNLRILFN
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS56 LPGHYEVLDLKPNGKVASVEMVKYHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 NAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIGMEDSPDLLAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIGMEDSPDLLAAR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 KVADHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KVADHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDSVV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 IFSGEGSDELTQGYIYFHKAPSPEKAEEESERLLRELYLFDVLRADRTTAAHGLELRVPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IFSGEGSDELTQGYIYFHKAPSPEKAEEESERLLRELYLFDVLRADRTTAAHGLELRVPF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 LDHRFSSYYLSLPPEMRIPKNGIEKHLLRETFEDSNLIPKEILWRPKEAFSDGITSVKNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LDHRFSSYYLSLPPEMRIPKNGIEKHLLRETFEDSNLIPKEILWRPKEAFSDGITSVKNS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 WFKILQEYVEHQVDDAMMANAAQKFPFNTPKTKEGYYYRQVFERHYPGRADWLSHYWMPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WFKILQEYVEHQVDDAMMANAAQKFPFNTPKTKEGYYYRQVFERHYPGRADWLSHYWMPK
490 500 510 520 530 540
550 560
pF1KB4 WINATDPSARTLTHYKSAVKA
:::::::::::::::::::::
CCDS56 WINATDPSARTLTHYKSAVKA
550 560
>>CCDS55132.1 ASNS gene_id:440|Hs108|chr7 (540 aa)
initn: 3625 init1: 3625 opt: 3625 Z-score: 4753.0 bits: 889.3 E(32554): 0
Smith-Waterman score: 3625; 99.8% identity (99.8% similar) in 540 aa overlap (22-561:1-540)
10 20 30 40 50 60
pF1KB4 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQ
:::::::::::::::::::::::::::::::::::::::
CCDS55 MKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQ
10 20 30
70 80 90 100 110 120
pF1KB4 PIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB4 FAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB4 LPGHYEVLDLKPNGKVASVEMVKYHHCRDEPLHALYDNVEKLFPGFEIETVKNNLRILFN
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS55 LPGHYEVLDLKPNGKVASVEMVKYHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB4 NAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIGMEDSPDLLAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIGMEDSPDLLAAR
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB4 KVADHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KVADHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDSVV
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB4 IFSGEGSDELTQGYIYFHKAPSPEKAEEESERLLRELYLFDVLRADRTTAAHGLELRVPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFSGEGSDELTQGYIYFHKAPSPEKAEEESERLLRELYLFDVLRADRTTAAHGLELRVPF
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB4 LDHRFSSYYLSLPPEMRIPKNGIEKHLLRETFEDSNLIPKEILWRPKEAFSDGITSVKNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LDHRFSSYYLSLPPEMRIPKNGIEKHLLRETFEDSNLIPKEILWRPKEAFSDGITSVKNS
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB4 WFKILQEYVEHQVDDAMMANAAQKFPFNTPKTKEGYYYRQVFERHYPGRADWLSHYWMPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WFKILQEYVEHQVDDAMMANAAQKFPFNTPKTKEGYYYRQVFERHYPGRADWLSHYWMPK
460 470 480 490 500 510
550 560
pF1KB4 WINATDPSARTLTHYKSAVKA
:::::::::::::::::::::
CCDS55 WINATDPSARTLTHYKSAVKA
520 530 540
>>CCDS55131.1 ASNS gene_id:440|Hs108|chr7 (478 aa)
initn: 3164 init1: 3164 opt: 3164 Z-score: 4148.8 bits: 777.3 E(32554): 0
Smith-Waterman score: 3164; 99.8% identity (99.8% similar) in 478 aa overlap (84-561:1-478)
60 70 80 90 100 110
pF1KB4 DPLFGMQPIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQT
::::::::::::::::::::::::::::::
CCDS55 MQQHFEFEYQTKVDGEIILHLYDKGGIEQT
10 20 30
120 130 140 150 160 170
pF1KB4 ICMLDGVFAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ICMLDGVFAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATP
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB4 FLKVEPFLPGHYEVLDLKPNGKVASVEMVKYHHCRDEPLHALYDNVEKLFPGFEIETVKN
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS55 FLKVEPFLPGHYEVLDLKPNGKVASVEMVKYHHCRDVPLHALYDNVEKLFPGFEIETVKN
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB4 NLRILFNNAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIGMEDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NLRILFNNAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIGMEDS
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB4 PDLLAARKVADHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PDLLAARKVADHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIR
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB4 KNTDSVVIFSGEGSDELTQGYIYFHKAPSPEKAEEESERLLRELYLFDVLRADRTTAAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KNTDSVVIFSGEGSDELTQGYIYFHKAPSPEKAEEESERLLRELYLFDVLRADRTTAAHG
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB4 LELRVPFLDHRFSSYYLSLPPEMRIPKNGIEKHLLRETFEDSNLIPKEILWRPKEAFSDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LELRVPFLDHRFSSYYLSLPPEMRIPKNGIEKHLLRETFEDSNLIPKEILWRPKEAFSDG
340 350 360 370 380 390
480 490 500 510 520 530
pF1KB4 ITSVKNSWFKILQEYVEHQVDDAMMANAAQKFPFNTPKTKEGYYYRQVFERHYPGRADWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ITSVKNSWFKILQEYVEHQVDDAMMANAAQKFPFNTPKTKEGYYYRQVFERHYPGRADWL
400 410 420 430 440 450
540 550 560
pF1KB4 SHYWMPKWINATDPSARTLTHYKSAVKA
::::::::::::::::::::::::::::
CCDS55 SHYWMPKWINATDPSARTLTHYKSAVKA
460 470
561 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:33:19 2016 done: Sat Nov 5 05:33:19 2016
Total Scan time: 2.570 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]