Result of FASTA (ccds) for
pF1KB4000
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4000, 214 aa
1>>>pF1KB4000 214 - 214 aa - 214 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0362+/-0.000852; mu= 15.0084+/- 0.052
mean_var=72.9970+/-14.841, 0's: 0 Z-trim(108.3): 168 B-trim: 627 in 2/49
Lambda= 0.150114
statistics sampled from 9905 (10094) to 9905 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.31), width: 16
Scan time: 1.860
The best scores are: opt bits E(32554)
CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 ( 214) 1472 327.7 3.4e-90
CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 ( 205) 1023 230.4 6.1e-61
CCDS221.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 834 189.5 1.2e-48
CCDS222.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 822 186.9 7.4e-48
CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 ( 192) 802 182.6 1.5e-46
CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 ( 192) 797 181.5 3.2e-46
CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 ( 192) 777 177.1 6.3e-45
CCDS7748.1 RHOG gene_id:391|Hs108|chr11 ( 191) 666 153.1 1.1e-37
CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 ( 258) 660 151.9 3.4e-37
CCDS2795.1 RHOA gene_id:387|Hs108|chr3 ( 193) 632 145.7 1.8e-35
CCDS854.1 RHOC gene_id:389|Hs108|chr1 ( 193) 627 144.7 3.8e-35
CCDS10068.1 RHOV gene_id:171177|Hs108|chr15 ( 236) 619 143.0 1.5e-34
CCDS1699.1 RHOB gene_id:388|Hs108|chr2 ( 196) 613 141.6 3.2e-34
CCDS9222.1 RHOF gene_id:54509|Hs108|chr12 ( 211) 575 133.4 1e-31
CCDS8155.1 RHOD gene_id:29984|Hs108|chr11 ( 210) 537 125.2 3e-29
CCDS82775.1 RHOA gene_id:387|Hs108|chr3 ( 187) 521 121.7 3e-28
CCDS2190.1 RND3 gene_id:390|Hs108|chr2 ( 244) 491 115.3 3.4e-26
CCDS3458.1 RHOH gene_id:399|Hs108|chr4 ( 191) 470 110.6 6.5e-25
CCDS11452.1 RND2 gene_id:8153|Hs108|chr17 ( 227) 464 109.4 1.8e-24
CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 ( 211) 438 103.8 8.6e-23
CCDS8771.1 RND1 gene_id:27289|Hs108|chr12 ( 232) 425 101.0 6.5e-22
CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 727) 279 69.8 5.1e-12
CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 734) 279 69.8 5.1e-12
CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 749) 279 69.8 5.2e-12
CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10 ( 696) 268 67.4 2.6e-11
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 ( 190) 256 64.3 5.8e-11
CCDS7699.1 HRAS gene_id:3265|Hs108|chr11 ( 170) 253 63.6 8.4e-11
CCDS7698.1 HRAS gene_id:3265|Hs108|chr11 ( 189) 253 63.7 9.1e-11
>>CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 (214 aa)
initn: 1472 init1: 1472 opt: 1472 Z-score: 1732.8 bits: 327.7 E(32554): 3.4e-90
Smith-Waterman score: 1472; 99.5% identity (99.5% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPGEYVPTVFDHYAV
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS97 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
130 140 150 160 170 180
190 200 210
pF1KB4 KGLKAVFDEAILTIFHPKKKKKRCSEGHSCCSII
::::::::::::::::::::::::::::::::::
CCDS97 KGLKAVFDEAILTIFHPKKKKKRCSEGHSCCSII
190 200 210
>>CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 (205 aa)
initn: 1032 init1: 1004 opt: 1023 Z-score: 1207.5 bits: 230.4 E(32554): 6.1e-61
Smith-Waterman score: 1023; 79.1% identity (89.8% similar) in 196 aa overlap (21-213:9-204)
10 20 30 40 50 60
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPGEYVPTVFDHYAV
::::::::::::::::::::::::::: ::::::::::::
CCDS33 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV
10 20 30 40
70 80 90 100 110 120
pF1KB4 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
.:::::::.:::::::::::::..::::::: :::::::::::::::..::.::::::::
CCDS33 SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
. :.::..:::::::::::::::::: :::::. :.: :::: ::: ::.:::::::
CCDS33 EYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ
110 120 130 140 150 160
190 200 210
pF1KB4 KGLKAVFDEAILTIFHPKK---KKKRCSEGHSCCSII
::::.::::::..:. ::: ::. :. .:: :
CCDS33 KGLKTVFDEAIIAILTPKKHTVKKRIGSRCINCCLIT
170 180 190 200
>>CCDS221.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 825 init1: 825 opt: 834 Z-score: 986.7 bits: 189.5 E(32554): 1.2e-48
Smith-Waterman score: 834; 64.2% identity (86.6% similar) in 187 aa overlap (20-204:2-188)
10 20 30 40 50 60
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPGEYVPTVFDHYAV
. .::::::::::::::::.::... ::.::::::::.:::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV
10 20 30 40
70 80 90 100 110 120
pF1KB4 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
:: .::. . :::.::::::::..:::::::.:::::.:::::.:.:..::.:.::::.
CCDS22 TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
:..:..:.::::::::::.:. .: :.::.: : . :::. . : :.:::::::
CCDS22 HHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ
110 120 130 140 150 160
190 200 210
pF1KB4 KGLKAVFDEAILTIFHPK--KKKKRCSEGHSCCSII
:::: :::::::. ..: ::..::
CCDS22 KGLKNVFDEAILAALEPPEPKKSRRCVLL
170 180 190
>>CCDS222.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 844 init1: 811 opt: 822 Z-score: 972.7 bits: 186.9 E(32554): 7.4e-48
Smith-Waterman score: 822; 62.6% identity (86.1% similar) in 187 aa overlap (20-204:2-188)
10 20 30 40 50 60
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPGEYVPTVFDHYAV
. .::::::::::::::::.::... ::.::::::::.:::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV
10 20 30 40
70 80 90 100 110 120
pF1KB4 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
:: .::. . :::.::::::::..:::::::.:::::.:::::.:.:..::.:.::::.
CCDS22 TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
:..:..:.::::::::::.:. .: :.::.: : . :::. . : :.:::::::
CCDS22 HHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ
110 120 130 140 150 160
190 200 210
pF1KB4 KGLKAVFDEAILTIFHPK--KKKKRCSEGHSCCSII
.::: :::::::. ..: . :..:
CCDS22 RGLKNVFDEAILAALEPPETQPKRKCCIF
170 180 190
>>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 (192 aa)
initn: 792 init1: 792 opt: 802 Z-score: 949.3 bits: 182.6 E(32554): 1.5e-46
Smith-Waterman score: 802; 61.2% identity (84.0% similar) in 188 aa overlap (20-204:2-189)
10 20 30 40 50 60
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPGEYVPTVFDHYAV
. .::::::::::::::::.::...::::::.:::::.:..
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA
10 20 30 40
70 80 90 100 110 120
pF1KB4 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
.: : :: :::.::::::::..:::::::.:::::::::.:.:::..::. .: ::..
CCDS53 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
:..: .:.::..::::: :. .: : :.:: .:. .:: ::: :::::::::
CCDS53 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ
110 120 130 140 150 160
190 200 210
pF1KB4 KGLKAVFDEAILTIFHP---KKKKKRCSEGHSCCSII
.:::.:::::: ... : ::.:..:
CCDS53 RGLKTVFDEAIRAVLCPPPVKKRKRKCLLL
170 180 190
>>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 (192 aa)
initn: 787 init1: 787 opt: 797 Z-score: 943.4 bits: 181.5 E(32554): 3.2e-46
Smith-Waterman score: 797; 60.8% identity (83.1% similar) in 189 aa overlap (20-205:2-190)
10 20 30 40 50 60
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPGEYVPTVFDHYAV
. .::::::::::::::::.::...::::::.:::::.:..
CCDS11 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA
10 20 30 40
70 80 90 100 110 120
pF1KB4 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
.: : :: :::.::::::::..:::::::.:::::::::.:.:::..::. .: ::..
CCDS11 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
::.: .:.::..::::: :. :: : :.:: .:. .:. ::. :::::::::
CCDS11 HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ
110 120 130 140 150 160
190 200 210
pF1KB4 KGLKAVFDEAILTIFHP---KKKKKRCSEGHSCCSII
.:::.:::::: ... : :: :.:.
CCDS11 RGLKTVFDEAIRAVLCPPPVKKPGKKCTVF
170 180 190
>>CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 (192 aa)
initn: 804 init1: 764 opt: 777 Z-score: 920.0 bits: 177.1 E(32554): 6.3e-45
Smith-Waterman score: 777; 59.8% identity (82.5% similar) in 189 aa overlap (20-205:2-190)
10 20 30 40 50 60
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPGEYVPTVFDHYAV
. .::::::::::::::::.::...::::::.:::::.:..
CCDS13 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA
10 20 30 40
70 80 90 100 110 120
pF1KB4 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
.: : .: :::.::::::::..:::::::.:::::::::.:.::::.::. .: ::..
CCDS13 NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
: .: .:.::..::::: :. .: : :.:: .:. ::: : . :::::::::
CCDS13 HHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ
110 120 130 140 150 160
190 200 210
pF1KB4 KGLKAVFDEAILTIFHP---KKKKKRCSEGHSCCSII
.:::.:::::: ... : ...:. ::
CCDS13 RGLKTVFDEAIRAVLCPQPTRQQKRACSLL
170 180 190
>>CCDS7748.1 RHOG gene_id:391|Hs108|chr11 (191 aa)
initn: 667 init1: 652 opt: 666 Z-score: 790.1 bits: 153.1 E(32554): 1.1e-37
Smith-Waterman score: 666; 53.4% identity (76.7% similar) in 189 aa overlap (22-210:4-188)
10 20 30 40 50 60
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPGEYVPTVFDHYAV
.::::::::::::::::. :...::: ::.:::::.:..
CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA
10 20 30 40
70 80 90 100 110 120
pF1KB4 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
.: :. :.:.::::::.:..:: ::::.:.::.::::...: ::.::...: ::.
CCDS77 QSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
: :: .:.::. ::: .: :: :: . . :.: ..: ::: : : ::::::: :
CCDS77 HHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQ
110 120 130 140 150 160
190 200 210
pF1KB4 KGLKAVFDEAILTIFHPKKKKKRCSEGHSCCSII
:.: :: ::. ....: :. :.::
CCDS77 DGVKEVFAEAVRAVLNPTPIKR----GRSCILL
170 180 190
>>CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 (258 aa)
initn: 656 init1: 635 opt: 660 Z-score: 781.3 bits: 151.9 E(32554): 3.4e-37
Smith-Waterman score: 660; 50.2% identity (76.1% similar) in 205 aa overlap (6-203:34-238)
10 20 30
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKT
: .. : :. : . .:::.:::::::::
CCDS15 QQGDPAFPDRCEAPPVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB4 CLLMSYANDAFPGEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDV
:..::.....: ::.::.::.....:.: :. : : :::::.....:::: : :::.
CCDS15 SLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB4 FLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPL
::.:::::.:.:..::.:.::::.. :..: .:.::: :::.: :.: .: ::::.
CCDS15 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPV
130 140 150 160 170 180
160 170 180 190 200
pF1KB4 TYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL-------TIFHPKKKKKRCSEGH
: . :. : : :.::::::::.:: ::: ::. : .:::.:.:
CCDS15 PEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKM
190 200 210 220 230 240
210
pF1KB4 SCCSII
CCDS15 KNLSKSWWKKYCCFV
250
>>CCDS2795.1 RHOA gene_id:387|Hs108|chr3 (193 aa)
initn: 635 init1: 619 opt: 632 Z-score: 750.3 bits: 145.7 E(32554): 1.8e-35
Smith-Waterman score: 632; 50.3% identity (77.3% similar) in 181 aa overlap (23-203:7-187)
10 20 30 40 50 60
pF1KB4 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPGEYVPTVFDHYAV
: :.::::: ::::::. ...: :: ::::::..:..
CCDS27 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA
10 20 30 40
70 80 90 100 110 120
pF1KB4 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
. : ::: :.:.::::::::..:::::::.:::.:.:::. .: : .:. :.:.::.:
CCDS27 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
:.:: .:.:.. :::.: .: .: ::..:. :.: .:. ::: :.:::: :.
CCDS27 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK
110 120 130 140 150 160
190 200 210
pF1KB4 KGLKAVFDEAILTIFHPKKKKKRCSEGHSCCSII
:.. ::. : . .. .. ::.
CCDS27 DGVREVFEMATRAALQARRGKKKSGCLVL
170 180 190
214 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:48:03 2016 done: Fri Nov 4 02:48:03 2016
Total Scan time: 1.860 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]