Result of FASTA (ccds) for
pF1KB3985
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3985, 336 aa
1>>>pF1KB3985 336 - 336 aa - 336 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8425+/-0.00078; mu= 10.3164+/- 0.047
mean_var=130.5212+/-25.911, 0's: 0 Z-trim(112.8): 60 B-trim: 179 in 2/51
Lambda= 0.112262
statistics sampled from 13480 (13541) to 13480 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.416), width: 16
Scan time: 2.880
The best scores are: opt bits E(32554)
CCDS673.1 ST6GALNAC5 gene_id:81849|Hs108|chr1 ( 336) 2349 391.2 6.3e-109
CCDS69668.1 ST6GALNAC6 gene_id:30815|Hs108|chr9 ( 299) 951 164.8 8.3e-41
CCDS6882.1 ST6GALNAC6 gene_id:30815|Hs108|chr9 ( 333) 951 164.8 9e-41
CCDS6883.1 ST6GALNAC4 gene_id:27090|Hs108|chr9 ( 302) 850 148.4 7e-36
CCDS672.1 ST6GALNAC3 gene_id:256435|Hs108|chr1 ( 305) 766 134.8 8.8e-32
CCDS69669.1 ST6GALNAC6 gene_id:30815|Hs108|chr9 ( 374) 705 125.0 9.7e-29
>>CCDS673.1 ST6GALNAC5 gene_id:81849|Hs108|chr1 (336 aa)
initn: 2349 init1: 2349 opt: 2349 Z-score: 2069.1 bits: 391.2 E(32554): 6.3e-109
Smith-Waterman score: 2349; 100.0% identity (100.0% similar) in 336 aa overlap (1-336:1-336)
10 20 30 40 50 60
pF1KB3 MKTLMRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPQQQQQQQQQQQQASATGSSQPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MKTLMRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPQQQQQQQQQQQQASATGSSQPAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ESSTQQRPGVPAGPRPLDGYLGVADHKPLKMHCRDCALVTSSGHLLHSRQGSQIDQTECV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ESSTQQRPGVPAGPRPLDGYLGVADHKPLKMHCRDCALVTSSGHLLHSRQGSQIDQTECV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 IRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 IRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GKGQVYNNLHLLSQVLPRLKAFMITRHKMLQFDELFKQETGKDRKISNTWLSTGWFTMTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GKGQVYNNLHLLSQVLPRLKAFMITRHKMLQFDELFKQETGKDRKISNTWLSTGWFTMTI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 ALELCDRINVYGMVPPDFCRDPNHPSVPYHYYEPFGPDECTMYLSHERGRKGSHHRFITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ALELCDRINVYGMVPPDFCRDPNHPSVPYHYYEPFGPDECTMYLSHERGRKGSHHRFITE
250 260 270 280 290 300
310 320 330
pF1KB3 KRVFKNWARTFNIHFFQPDWKPESLAINHPENKPVF
::::::::::::::::::::::::::::::::::::
CCDS67 KRVFKNWARTFNIHFFQPDWKPESLAINHPENKPVF
310 320 330
>>CCDS69668.1 ST6GALNAC6 gene_id:30815|Hs108|chr9 (299 aa)
initn: 844 init1: 553 opt: 951 Z-score: 846.1 bits: 164.8 E(32554): 8.3e-41
Smith-Waterman score: 951; 52.0% identity (81.1% similar) in 244 aa overlap (78-320:56-298)
50 60 70 80 90 100
pF1KB3 QQASATGSSQPAAESSTQQRPGVPAGPRPLDGYLGVADHKPLKMHCRDCALVTSSGHLLH
:::. . .: : .:..:..:.::.:::
CCDS69 SSNSANEVFHYGSLRGRSRRPVNLKKWSITDGYVPILGNKTLPSRCHQCVIVSSSSHLLG
30 40 50 60 70 80
110 120 130 140 150 160
pF1KB3 SRQGSQIDQTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTV
.. : .:...::.:::::::: ::. ::::.:. ::.::::. :.:: ....: . ::
CCDS69 TKLGPEIERAECTIRMNDAPTTGYSADVGNKTTYRVVAHSSVFRVLRRPQEFVNRTPETV
90 100 110 120 130 140
170 180 190 200 210 220
pF1KB3 FIFWGPSSYMRRDGKGQVYNNLHLLSQVLPRLKAFMITRHKMLQFDELFKQETGKDRKIS
:::::: : :.. .:.. .. . :.: ..:. .. .: :::.::. ::::::. :
CCDS69 FIFWGPPSKMQKP-QGSLVRVIQRAGLVFPNMEAYAVSPGRMRQFDDLFRGETGKDREKS
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB3 NTWLSTGWFTMTIALELCDRINVYGMVPPDFCRD-PNHPSVPYHYYEPFGPDECTMYLSH
..:::::::::.::.::::...:::::::..: . : .::::::: :::::. :...
CCDS69 HSWLSTGWFTMVIAVELCDHVHVYGMVPPNYCSQRPRLQRMPYHYYEPKGPDECVTYIQN
210 220 230 240 250 260
290 300 310 320 330
pF1KB3 ERGRKGSHHRFITEKRVFKNWARTFNIHFFQPDWKPESLAINHPENKPVF
:..:::.:::::::::::..::. ..: : .:.:
CCDS69 EHSRKGNHHRFITEKRVFSSWAQLYGITFSHPSWT
270 280 290
>>CCDS6882.1 ST6GALNAC6 gene_id:30815|Hs108|chr9 (333 aa)
initn: 868 init1: 553 opt: 951 Z-score: 845.4 bits: 164.8 E(32554): 9e-41
Smith-Waterman score: 951; 52.0% identity (81.1% similar) in 244 aa overlap (78-320:90-332)
50 60 70 80 90 100
pF1KB3 QQASATGSSQPAAESSTQQRPGVPAGPRPLDGYLGVADHKPLKMHCRDCALVTSSGHLLH
:::. . .: : .:..:..:.::.:::
CCDS68 SSNSANEVFHYGSLRGRSRRPVNLKKWSITDGYVPILGNKTLPSRCHQCVIVSSSSHLLG
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB3 SRQGSQIDQTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTV
.. : .:...::.:::::::: ::. ::::.:. ::.::::. :.:: ....: . ::
CCDS68 TKLGPEIERAECTIRMNDAPTTGYSADVGNKTTYRVVAHSSVFRVLRRPQEFVNRTPETV
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB3 FIFWGPSSYMRRDGKGQVYNNLHLLSQVLPRLKAFMITRHKMLQFDELFKQETGKDRKIS
:::::: : :.. .:.. .. . :.: ..:. .. .: :::.::. ::::::. :
CCDS68 FIFWGPPSKMQKP-QGSLVRVIQRAGLVFPNMEAYAVSPGRMRQFDDLFRGETGKDREKS
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 NTWLSTGWFTMTIALELCDRINVYGMVPPDFCRD-PNHPSVPYHYYEPFGPDECTMYLSH
..:::::::::.::.::::...:::::::..: . : .::::::: :::::. :...
CCDS68 HSWLSTGWFTMVIAVELCDHVHVYGMVPPNYCSQRPRLQRMPYHYYEPKGPDECVTYIQN
240 250 260 270 280 290
290 300 310 320 330
pF1KB3 ERGRKGSHHRFITEKRVFKNWARTFNIHFFQPDWKPESLAINHPENKPVF
:..:::.:::::::::::..::. ..: : .:.:
CCDS68 EHSRKGNHHRFITEKRVFSSWAQLYGITFSHPSWT
300 310 320 330
>>CCDS6883.1 ST6GALNAC4 gene_id:27090|Hs108|chr9 (302 aa)
initn: 822 init1: 690 opt: 850 Z-score: 757.6 bits: 148.4 E(32554): 7e-36
Smith-Waterman score: 850; 47.9% identity (75.5% similar) in 261 aa overlap (64-323:44-302)
40 50 60 70 80 90
pF1KB3 ERPPQQQQQQQQQQQQASATGSSQPAAESSTQQRPGVPAGPRPLDGYLGVADHKPL-KMH
: .:: :: :: ..:: .: : ::: .
CCDS68 SVVFSAVYILLCCWAGLPLCLATCLDHHFPTGSRPTVP-GPLHFSGYSSVPDGKPLVREP
20 30 40 50 60 70
100 110 120 130 140 150
pF1KB3 CRDCALVTSSGHLLHSRQGSQIDQTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRI
::.::.:.:::..: : :..::..:::.:::.::: :. :::.:..:::..:.:. .
CCDS68 CRSCAVVSSSGQMLGSGLGAEIDSAECVFRMNQAPTVGFEADVGQRSTLRVVSHTSVPLL
80 90 100 110 120 130
160 170 180 190 200 210
pF1KB3 LRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLHLLSQVLPRLKAFMITRHKMLQF
::: .. .. :... :: . .: : :..: .: :... : :... .:.. :
CCDS68 LRNYSHYFQKARDTLYMVWGQGRHMDRVLGGRTYRTLLQLTRMYPGLQVYTFTERMMAYC
140 150 160 170 180 190
220 230 240 250 260 270
pF1KB3 DELFKQETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHPSVPYHYY
:..:..::::.:. :...:::::::: .:::::..: ::::: ..::. .::::::::.
CCDS68 DQIFQDETGKNRRQSGSFLSTGWFTMILALELCEEIVVYGMVSDSYCREKSHPSVPYHYF
200 210 220 230 240 250
280 290 300 310 320 330
pF1KB3 EPFGPDECTMYLSHERGRKGSHHRFITEKRVFKNWARTFNIHFFQPDWKPESLAINHPEN
: ::: :::.::.. . : ::::::: ::. ::. : : .:.:. :
CCDS68 EKGRLDECQMYLAHEQAPR-SAHRFITEKAVFSRWAKKRPIVFAHPSWRTE
260 270 280 290 300
pF1KB3 KPVF
>>CCDS672.1 ST6GALNAC3 gene_id:256435|Hs108|chr1 (305 aa)
initn: 756 init1: 616 opt: 766 Z-score: 684.0 bits: 134.8 E(32554): 8.8e-32
Smith-Waterman score: 766; 43.0% identity (72.3% similar) in 249 aa overlap (75-320:56-302)
50 60 70 80 90 100
pF1KB3 QQQQQASATGSSQPAAESSTQQRPGVPAGPRPLD---GYLGVADHKPLKMHCRDCALVTS
::: ::..: ..::.. : ::.:..
CCDS67 RLVNEVNFPLLLNCFGQPGTKWIPFSYTYRRPLRTHYGYINVKTQEPLQLDCDLCAIVSN
30 40 50 60 70 80
110 120 130 140 150 160
pF1KB3 SGHLLHSRQGSQIDQTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLN
::... .. :..::.. :. :::.:::.:: .::: : .::..:.:. .:.: ...
CCDS67 SGQMVGQKVGNEIDRSSCIWRMNNAPTKGYEEDVGRMTMIRVVSHTSVPLLLKNPDYFFK
90 100 110 120 130 140
170 180 190 200 210 220
pF1KB3 VSQGTVFIFWGPSSYMRRDGKGQVYNNLHLLSQVLPRLKAFMITRHKMLQFDELFKQETG
.. :....::: ::.::.: ::: :. . : . .. :...: : .::.:::
CCDS67 EANTTIYVIWGPFRNMRKDGNGIVYNMLKKTVGIYPNAQIYVTTEKRMSYCDGVFKKETG
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB3 KDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHPSVPYHYYEPFGPDECT
::: :...:::::::. .:.. : :.::::. .:. .. .::::::: : :::
CCDS67 KDRVQSGSYLSTGWFTFLLAMDACYGIHVYGMINDTYCKTEGYRKVPYHYYEQ-GRDECD
210 220 230 240 250 260
290 300 310 320 330
pF1KB3 MYLSHERGRKGSHHRFITEKRVFKNWARTFNIHFFQPDWKPESLAINHPENKPVF
:. ::.. :.: ::::::.:: .::. : : .:.:
CCDS67 EYFLHEHAPYGGH-RFITEKKVFAKWAKKHRIIFTHPNWTLS
270 280 290 300
>>CCDS69669.1 ST6GALNAC6 gene_id:30815|Hs108|chr9 (374 aa)
initn: 720 init1: 382 opt: 705 Z-score: 629.4 bits: 125.0 E(32554): 9.7e-29
Smith-Waterman score: 706; 45.9% identity (71.6% similar) in 229 aa overlap (78-296:90-317)
50 60 70 80 90 100
pF1KB3 QQASATGSSQPAAESSTQQRPGVPAGPRPLDGYLGVADHKPLKMHCRDCALVTSSGHLLH
:::. . .: : .:..:..:.::.:::
CCDS69 SSNSANEVFHYGSLRGRSRRPVNLKKWSITDGYVPILGNKTLPSRCHQCVIVSSSSHLLG
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB3 SRQGSQIDQTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTV
.. : .:...::.:::::::: ::. ::::.:. ::.::::. :.:: ....: . ::
CCDS69 TKLGPEIERAECTIRMNDAPTTGYSADVGNKTTYRVVAHSSVFRVLRRPQEFVNRTPETV
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB3 FIFWGPSSYMRRDGKGQVYNNLHLLSQVLPRLKAFMITRHKMLQFDELFKQETGKDRKIS
:::::: : :.. .:.. .. . :.: ..:. .. .: :::.::. ::::::. :
CCDS69 FIFWGPPSKMQKP-QGSLVRVIQRAGLVFPNMEAYAVSPGRMRQFDDLFRGETGKDREKS
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 NTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHPSVPYHYYEPFGPDEC--TMYLS
..:::::::::.::.::::...:::::::..: : . : : : . : .:
CCDS69 HSWLSTGWFTMVIAVELCDHVHVYGMVPPNYCSGPASSACPTTTTSPRGRTNVSPTSRMS
240 250 260 270 280 290
290 300 310 320 330
pF1KB3 H-ERG-------RKGSHHRFITEKRVFKNWARTFNIHFFQPDWKPESLAINHPENKPVF
:. :::: ::
CCDS69 TVARATTTASSPRKGSSHRGPSCMASPSPTPPGPRPPSLWDLRRVRGEAASAQPLGQGPS
300 310 320 330 340 350
336 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:30:44 2016 done: Sat Nov 5 05:30:45 2016
Total Scan time: 2.880 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]