FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3968, 445 aa
  1>>>pF1KB3968 445 - 445 aa - 445 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5858+/-0.000943; mu= 16.5287+/- 0.057
 mean_var=74.2355+/-15.750, 0's: 0 Z-trim(105.2): 19  B-trim: 459 in 1/51
 Lambda= 0.148857
 statistics sampled from 8294 (8303) to 8294 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.255), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS13088.1 CDS2 gene_id:8760|Hs108|chr20          ( 445) 3038 662.0 3.5e-190
CCDS3608.1 CDS1 gene_id:1040|Hs108|chr4            ( 461) 2232 488.9 4.6e-138


>>CCDS13088.1 CDS2 gene_id:8760|Hs108|chr20               (445 aa)
 initn: 3038 init1: 3038 opt: 3038  Z-score: 3527.9  bits: 662.0 E(32554): 3.5e-190
Smith-Waterman score: 3038; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KB3 MTELRQRVAHEPVAPPEDKESESEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTELRQRVAHEPVAPPEDKESESEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 FVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGMIWFIVPISCVICNDIMAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGMIWFIVPISCVICNDIMAY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 MFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMSGYRCFVCPVEYNNDTNSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMSGYRCFVCPVEYNNDTNSF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 TVDCEPSDLFRLQEYNIPGVIQSVIGWKTVRMYPFQIHSIALSTFASLIGPFGGFFASGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVDCEPSDLFRLQEYNIPGVIQSVIGWKTVRMYPFQIHSIALSTFASLIGPFGGFFASGF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 KRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQ
              370       380       390       400       410       420

              430       440     
pF1KB3 QLHIFNTLRSHLIDKGMLTSTTEDE
       :::::::::::::::::::::::::
CCDS13 QLHIFNTLRSHLIDKGMLTSTTEDE
              430       440     

>>CCDS3608.1 CDS1 gene_id:1040|Hs108|chr4                 (461 aa)
 initn: 2247 init1: 2218 opt: 2232  Z-score: 2592.2  bits: 488.9 E(32554): 4.6e-138
Smith-Waterman score: 2247; 71.5% identity (88.9% similar) in 459 aa overlap (1-441:1-458)

                   10                20            30        40    
pF1KB3 MTELRQRVA----HEPVAPPE--------DKESES----EAKVDGETASDSESRAES-AP
       : :::.: .    .: :.::.        :.:.::    :. .: .  .: .::..:  :
CCDS36 MLELRHRGSCPGPREAVSPPHREGEAAGGDHETESTSDKETDID-DRYGDLDSRTDSDIP
               10        20        30        40         50         

             50        60        70        80        90       100  
pF1KB3 -LPVSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQ
        .: :.: :::.:..:::.:::::::::.::::::.::..::.:::.: ..::..:. .:
CCDS36 EIPPSSDRTPEILKKALSGLSSRWKNWWIRGILTLTMISLFFLIIYMGSFMLMLLVLGIQ
      60        70        80        90       100       110         

            110       120       130       140       150       160  
pF1KB3 IKCFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRIL
       .::::::::::: ::::::::::::::::::::::::::::::.::: :.::::: :..:
CCDS36 VKCFHEIITIGYRVYHSYDLPWFRTLSWYFLLCVNYFFYGETVADYFATFVQREEQLQFL
     120       130       140       150       160       170         

            170       180       190       200       210       220  
pF1KB3 SKYHRFISFTLYLIGFCMFVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGM
        .:::::::.::: :::::::::::::::::::::.::::::::.::::::::.::::::
CCDS36 IRYHRFISFALYLAGFCMFVLSLVKKHYRLQFYMFAWTHVTLLITVTQSHLVIQNLFEGM
     180       190       200       210       220       230         

            230       240       250       260       270       280  
pF1KB3 IWFIVPISCVICNDIMAYMFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMS
       :::.:::: :::::: ::.:::::::::::::::::::::::::::.:::::.. .::.:
CCDS36 IWFLVPISSVICNDITAYLFGFFFGRTPLIKLSPKKTWEGFIGGFFSTVVFGFIAAYVLS
     240       250       260       270       280       290         

            290       300       310       320       330       340  
pF1KB3 GYRCFVCPVEYNNDTNSFTVDCEPSDLFRLQEYNIPGVIQSVIGWKTVRMYPFQIHSIAL
        :. ::::::: .:.:::...::::.::.:: :..:  ...:.  . : .::::::::::
CCDS36 KYQYFVCPVEYRSDVNSFVTECEPSELFQLQTYSLPPFLKAVLRQERVSLYPFQIHSIAL
     300       310       320       330       340       350         

            350       360       370       380       390       400  
pF1KB3 STFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASFIR
       :::::::::::::::::::::::::::::::::::::::::::::::::::.:::.::::
CCDS36 STFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVHVYITSFIR
     360       370       380       390       400       410         

            410       420       430       440     
pF1KB3 GPNPSKLIQQFLTLRPDQQLHIFNTLRSHLIDKGMLTSTTEDE
       ::::::..::.:.:.:.:::.:..::..:::.::.:  :    
CCDS36 GPNPSKVLQQLLVLQPEQQLNIYKTLKTHLIEKGILQPTLKV 
     420       430       440       450       460  




445 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:29:00 2016 done: Sat Nov  5 05:29:01 2016
 Total Scan time:  2.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]