FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3906, 418 aa
  1>>>pF1KB3906 418 - 418 aa - 418 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7200+/-0.000392; mu= 17.8184+/- 0.025
 mean_var=123.0669+/-26.070, 0's: 0 Z-trim(114.9): 14  B-trim: 805 in 1/57
 Lambda= 0.115612
 statistics sampled from 25012 (25026) to 25012 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.293), width:  16
 Scan time:  8.820

The best scores are:                                      opt bits E(85289)
NP_620128 (OMIM: 610826,616505) solute carrier fam ( 418) 2803 478.8 1.1e-134
NP_001290179 (OMIM: 610826,616505) solute carrier  ( 327) 2116 364.1 2.9e-100
NP_001290178 (OMIM: 610826,616505) solute carrier  ( 337) 1578 274.4   3e-73


>>NP_620128 (OMIM: 610826,616505) solute carrier family   (418 aa)
 initn: 2803 init1: 2803 opt: 2803  Z-score: 2539.1  bits: 478.8 E(85289): 1.1e-134
Smith-Waterman score: 2803; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB3 MHPRRPDGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MHPRRPDGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SPPYGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 SPPYGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SEFTPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 SEFTPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KEGIGRVIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILKRKTYNSHLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 KEGIGRVIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILKRKTYNSHLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 ESTSPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 ESTSPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB3 PINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 PINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
              370       380       390       400       410        

>>NP_001290179 (OMIM: 610826,616505) solute carrier fami  (327 aa)
 initn: 2116 init1: 2116 opt: 2116  Z-score: 1921.1  bits: 364.1 E(85289): 2.9e-100
Smith-Waterman score: 2116; 99.7% identity (100.0% similar) in 325 aa overlap (94-418:3-327)

            70        80        90       100       110       120   
pF1KB3 YGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPCIVL
                                     .:::::::::::::::::::::::::::::
NP_001                             MKTEQLNRFAGFGIGLASLFTENVLAHPCIVL
                                           10        20        30  

           130       140       150       160       170       180   
pF1KB3 RRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEF
             40        50        60        70        80        90  

           190       200       210       220       230       240   
pF1KB3 TPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECVKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECVKEG
            100       110       120       130       140       150  

           250       260       270       280       290       300   
pF1KB3 IGRVIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILKRKTYNSHLAEST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGRVIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILKRKTYNSHLAEST
            160       170       180       190       200       210  

           310       320       330       340       350       360   
pF1KB3 SPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVLPIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVLPIN
            220       230       240       250       260       270  

           370       380       390       400       410        
pF1KB3 TQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
            280       290       300       310       320       

>>NP_001290178 (OMIM: 610826,616505) solute carrier fami  (337 aa)
 initn: 1578 init1: 1578 opt: 1578  Z-score: 1435.9  bits: 274.4 E(85289): 3e-73
Smith-Waterman score: 2118; 80.6% identity (80.6% similar) in 418 aa overlap (1-418:1-337)

               10        20        30        40        50        60
pF1KB3 MHPRRPDGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHPRRPDGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SPPYGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPYGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SEFTPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECV
       :::::::::::::::::::::::::::::::::::::::::::::::             
NP_001 SEFTPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQS-------------
              190       200       210       220                    

              250       260       270       280       290       300
pF1KB3 KEGIGRVIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILKRKTYNSHLA
                                                                   
NP_001 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KB3 ESTSPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVL
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------MLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVL
               230       240       250       260       270         

              370       380       390       400       410        
pF1KB3 PINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
     280       290       300       310       320       330       




418 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:26:28 2016 done: Sat Nov  5 05:26:29 2016
 Total Scan time:  8.820 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]