FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3906, 418 aa
  1>>>pF1KB3906 418 - 418 aa - 418 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6930+/-0.000981; mu= 11.7226+/- 0.059
 mean_var=114.7870+/-24.350, 0's: 0 Z-trim(107.8): 15  B-trim: 0 in 0/51
 Lambda= 0.119709
 statistics sampled from 9811 (9815) to 9811 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.301), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS4100.1 SLC25A46 gene_id:91137|Hs108|chr5       ( 418) 2803 495.1 5.3e-140
CCDS78045.1 SLC25A46 gene_id:91137|Hs108|chr5      ( 337) 1578 283.4 2.2e-76


>>CCDS4100.1 SLC25A46 gene_id:91137|Hs108|chr5            (418 aa)
 initn: 2803 init1: 2803 opt: 2803  Z-score: 2626.9  bits: 495.1 E(32554): 5.3e-140
Smith-Waterman score: 2803; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB3 MHPRRPDGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MHPRRPDGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SPPYGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SPPYGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SEFTPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SEFTPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KEGIGRVIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILKRKTYNSHLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KEGIGRVIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILKRKTYNSHLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 ESTSPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ESTSPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB3 PINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
              370       380       390       400       410        

>>CCDS78045.1 SLC25A46 gene_id:91137|Hs108|chr5           (337 aa)
 initn: 1578 init1: 1578 opt: 1578  Z-score: 1484.9  bits: 283.4 E(32554): 2.2e-76
Smith-Waterman score: 2118; 80.6% identity (80.6% similar) in 418 aa overlap (1-418:1-337)

               10        20        30        40        50        60
pF1KB3 MHPRRPDGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MHPRRPDGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SPPYGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SPPYGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SEFTPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECV
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS78 SEFTPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQS-------------
              190       200       210       220                    

              250       260       270       280       290       300
pF1KB3 KEGIGRVIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILKRKTYNSHLA
                                                                   
CCDS78 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KB3 ESTSPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVL
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 --------MLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVL
               230       240       250       260       270         

              370       380       390       400       410        
pF1KB3 PINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNNI
     280       290       300       310       320       330       




418 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:26:27 2016 done: Sat Nov  5 05:26:28 2016
 Total Scan time:  3.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]