Result of FASTA (omim) for
pF1KB3865
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3865, 334 aa
1>>>pF1KB3865 334 - 334 aa - 334 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1152+/-0.000345; mu= 17.5141+/- 0.022
mean_var=68.2691+/-13.383, 0's: 0 Z-trim(115.8): 14 B-trim: 0 in 0/56
Lambda= 0.155225
statistics sampled from 26527 (26541) to 26527 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.311), width: 16
Scan time: 8.260
The best scores are: opt bits E(85289)
NP_061114 (OMIM: 151290) galactosylgalactosylxylos ( 334) 2264 515.7 5.4e-146
NP_473366 (OMIM: 151290) galactosylgalactosylxylos ( 334) 2264 515.7 5.4e-146
XP_016873039 (OMIM: 151290) PREDICTED: galactosylg ( 334) 2264 515.7 5.4e-146
XP_011541055 (OMIM: 151290) PREDICTED: galactosylg ( 347) 2264 515.7 5.6e-146
XP_016873040 (OMIM: 151290) PREDICTED: galactosylg ( 347) 2264 515.7 5.6e-146
XP_011541053 (OMIM: 151290) PREDICTED: galactosylg ( 347) 2264 515.7 5.6e-146
XP_005271563 (OMIM: 151290) PREDICTED: galactosylg ( 347) 2264 515.7 5.6e-146
XP_016873041 (OMIM: 151290) PREDICTED: galactosylg ( 230) 1552 356.2 4e-98
NP_542780 (OMIM: 607497) galactosylgalactosylxylos ( 323) 985 229.3 8.8e-60
NP_001275650 (OMIM: 245600,606374) galactosylgalac ( 328) 870 203.5 5e-52
NP_036332 (OMIM: 245600,606374) galactosylgalactos ( 335) 870 203.5 5.1e-52
NP_001275651 (OMIM: 245600,606374) galactosylgalac ( 319) 798 187.4 3.5e-47
NP_001275652 (OMIM: 245600,606374) galactosylgalac ( 315) 789 185.4 1.4e-46
>>NP_061114 (OMIM: 151290) galactosylgalactosylxylosylpr (334 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 2742.0 bits: 515.7 E(85289): 5.4e-146
Smith-Waterman score: 2264; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 EDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 FPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 WKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 WKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPK
250 260 270 280 290 300
310 320 330
pF1KB3 AANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
::::::::::::::::::::::::::::::::::
NP_061 AANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
310 320 330
>>NP_473366 (OMIM: 151290) galactosylgalactosylxylosylpr (334 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 2742.0 bits: 515.7 E(85289): 5.4e-146
Smith-Waterman score: 2264; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 RDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 EDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 EDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 FPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 WKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 WKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPK
250 260 270 280 290 300
310 320 330
pF1KB3 AANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
::::::::::::::::::::::::::::::::::
NP_473 AANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
310 320 330
>>XP_016873039 (OMIM: 151290) PREDICTED: galactosylgalac (334 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 2742.0 bits: 515.7 E(85289): 5.4e-146
Smith-Waterman score: 2264; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 EDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 WKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPK
250 260 270 280 290 300
310 320 330
pF1KB3 AANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
::::::::::::::::::::::::::::::::::
XP_016 AANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
310 320 330
>>XP_011541055 (OMIM: 151290) PREDICTED: galactosylgalac (347 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 2741.8 bits: 515.7 E(85289): 5.6e-146
Smith-Waterman score: 2264; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:14-347)
10 20 30 40
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRET
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGNEEPWVQPALEMPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRET
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 PPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMAN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
250 260 270 280 290 300
290 300 310 320 330
pF1KB3 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
310 320 330 340
>>XP_016873040 (OMIM: 151290) PREDICTED: galactosylgalac (347 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 2741.8 bits: 515.7 E(85289): 5.6e-146
Smith-Waterman score: 2264; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:14-347)
10 20 30 40
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRET
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGNEEPWVQPALEMPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRET
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 PPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMAN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
250 260 270 280 290 300
290 300 310 320 330
pF1KB3 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
310 320 330 340
>>XP_011541053 (OMIM: 151290) PREDICTED: galactosylgalac (347 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 2741.8 bits: 515.7 E(85289): 5.6e-146
Smith-Waterman score: 2264; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:14-347)
10 20 30 40
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRET
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGNEEPWVQPALEMPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRET
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 PPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMAN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
250 260 270 280 290 300
290 300 310 320 330
pF1KB3 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
310 320 330 340
>>XP_005271563 (OMIM: 151290) PREDICTED: galactosylgalac (347 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 2741.8 bits: 515.7 E(85289): 5.6e-146
Smith-Waterman score: 2264; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:14-347)
10 20 30 40
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRET
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGNEEPWVQPALEMPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRET
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 PPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMAN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
250 260 270 280 290 300
290 300 310 320 330
pF1KB3 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
310 320 330 340
>>XP_016873041 (OMIM: 151290) PREDICTED: galactosylgalac (230 aa)
initn: 1552 init1: 1552 opt: 1552 Z-score: 1882.6 bits: 356.2 E(85289): 4e-98
Smith-Waterman score: 1552; 100.0% identity (100.0% similar) in 230 aa overlap (105-334:1-230)
80 90 100 110 120 130
pF1KB3 RPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLL
::::::::::::::::::::::::::::::
XP_016 MANTLLHVPNLHWLVVEDAPRRTPLTARLL
10 20 30
140 150 160 170 180 190
pF1KB3 RDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFA
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB3 DDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAID
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB3 MAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRT
160 170 180 190 200 210
320 330
pF1KB3 EKPVLVNEGKKGFTDPSVEI
::::::::::::::::::::
XP_016 EKPVLVNEGKKGFTDPSVEI
220 230
>>NP_542780 (OMIM: 607497) galactosylgalactosylxylosylpr (323 aa)
initn: 1022 init1: 363 opt: 985 Z-score: 1194.3 bits: 229.3 E(85289): 8.8e-60
Smith-Waterman score: 997; 50.3% identity (70.5% similar) in 336 aa overlap (12-334:10-323)
10 20 30 40 50
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTS-
.:.::: :.. . .: : : :: .:: :: : .
NP_542 MKSALFTRFFILLPWILIVII--------MLDV------DTRRPVPP-LTPRPYFSPY
10 20 30 40
60 70 80 90 100
pF1KB3 --DRDIVEV-VRT--------EYVYTRPPPWSDT-LPTIHVVTPTYSRPVQKAELTRMAN
: ... .: . .:: : . ::::...:::::::::::::::.::
NP_542 AVGRGGARLPLRRGGPAHGTQKRNQSRPQPQPEPQLPTIYAITPTYSRPVQKAELTRLAN
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB3 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
:. .: .:::..:::: :. :..:.: .:: ::::: ::: :: : .::.:
NP_542 TFRQVAQLHWILVEDAAARSELVSRFLARAGLPSTHLHVPTPRRYK------RPGLPRAT
110 120 130 140 150
170 180 190 200 210 220
pF1KB3 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
::: .: :::. .. .::::..:::::::::::::.:::.::.::::::..::: ::
NP_542 EQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRRY
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB3 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
: : :.. :::::: : . ::::::::::::.:..::. .: :: :: . :.:::..
NP_542 ERPLVEN-GKVVGWYTGWRADRPFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDF
220 230 240 250 260 270
290 300 310 320 330
pF1KB3 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
:....:...::::: ::::.::::::::: :.:: : . ..:.
NP_542 LKQITTVEELEPKANNCTKVLVWHTRTEKVNLANEPKYHLDTVKIEV
280 290 300 310 320
>>NP_001275650 (OMIM: 245600,606374) galactosylgalactosy (328 aa)
initn: 863 init1: 347 opt: 870 Z-score: 1055.0 bits: 203.5 E(85289): 5e-52
Smith-Waterman score: 885; 55.2% identity (73.7% similar) in 270 aa overlap (77-334:61-328)
50 60 70 80 90 100
pF1KB3 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
:: ..::::.::::::.: ::::::.:..
NP_001 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
40 50 60 70 80 90
110 120 130 140 150 160
pF1KB3 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
NP_001 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
100 110 120 130 140 150
170 180 190 200 210
pF1KB3 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
NP_001 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB3 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
NP_001 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
220 230 240 250 260
280 290 300 310 320 330
pF1KB3 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNE---GKKGF-TDPSVEI
.: . ::::: .:: .::::.:::::..:::::::::: . .: ..: .::..:.
NP_001 RG-HLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
270 280 290 300 310 320
334 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:25:51 2016 done: Sat Nov 5 05:25:53 2016
Total Scan time: 8.260 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]