Result of FASTA (ccds) for
pF1KB3865
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3865, 334 aa
1>>>pF1KB3865 334 - 334 aa - 334 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2301+/-0.000767; mu= 16.6559+/- 0.046
mean_var=66.3518+/-13.272, 0's: 0 Z-trim(108.8): 16 B-trim: 105 in 1/50
Lambda= 0.157452
statistics sampled from 10453 (10460) to 10453 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.321), width: 16
Scan time: 2.770
The best scores are: opt bits E(32554)
CCDS8500.1 B3GAT1 gene_id:27087|Hs108|chr11 ( 334) 2264 522.8 1.5e-148
CCDS4974.1 B3GAT2 gene_id:135152|Hs108|chr6 ( 323) 985 232.3 4.2e-61
CCDS8025.1 B3GAT3 gene_id:26229|Hs108|chr11 ( 335) 870 206.2 3.1e-53
CCDS76417.1 B3GAT3 gene_id:26229|Hs108|chr11 ( 319) 798 189.8 2.5e-48
CCDS76418.1 B3GAT3 gene_id:26229|Hs108|chr11 ( 315) 789 187.8 1e-47
>>CCDS8500.1 B3GAT1 gene_id:27087|Hs108|chr11 (334 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 2780.5 bits: 522.8 E(32554): 1.5e-148
Smith-Waterman score: 2264; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 RDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 EDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 EDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 FPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 WKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 WKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPK
250 260 270 280 290 300
310 320 330
pF1KB3 AANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
::::::::::::::::::::::::::::::::::
CCDS85 AANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
310 320 330
>>CCDS4974.1 B3GAT2 gene_id:135152|Hs108|chr6 (323 aa)
initn: 1022 init1: 363 opt: 985 Z-score: 1210.5 bits: 232.3 E(32554): 4.2e-61
Smith-Waterman score: 997; 50.3% identity (70.5% similar) in 336 aa overlap (12-334:10-323)
10 20 30 40 50
pF1KB3 MPKRRDILAIVLIVLPWTLLITVWHQSTLAPLLAVHKDEGSDPRRETPPGADPREYCTS-
.:.::: :.. . .: : : :: .:: :: : .
CCDS49 MKSALFTRFFILLPWILIVII--------MLDV------DTRRPVPP-LTPRPYFSPY
10 20 30 40
60 70 80 90 100
pF1KB3 --DRDIVEV-VRT--------EYVYTRPPPWSDT-LPTIHVVTPTYSRPVQKAELTRMAN
: ... .: . .:: : . ::::...:::::::::::::::.::
CCDS49 AVGRGGARLPLRRGGPAHGTQKRNQSRPQPQPEPQLPTIYAITPTYSRPVQKAELTRLAN
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB3 TLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGT
:. .: .:::..:::: :. :..:.: .:: ::::: ::: :: : .::.:
CCDS49 TFRQVAQLHWILVEDAAARSELVSRFLARAGLPSTHLHVPTPRRYK------RPGLPRAT
110 120 130 140 150
170 180 190 200 210 220
pF1KB3 MQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRY
::: .: :::. .. .::::..:::::::::::::.:::.::.::::::..::: ::
CCDS49 EQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRRY
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB3 EAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSL
: : :.. :::::: : . ::::::::::::.:..::. .: :: :: . :.:::..
CCDS49 ERPLVEN-GKVVGWYTGWRADRPFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDF
220 230 240 250 260 270
290 300 310 320 330
pF1KB3 LRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
:....:...::::: ::::.::::::::: :.:: : . ..:.
CCDS49 LKQITTVEELEPKANNCTKVLVWHTRTEKVNLANEPKYHLDTVKIEV
280 290 300 310 320
>>CCDS8025.1 B3GAT3 gene_id:26229|Hs108|chr11 (335 aa)
initn: 863 init1: 347 opt: 870 Z-score: 1069.1 bits: 206.2 E(32554): 3.1e-53
Smith-Waterman score: 885; 55.2% identity (73.7% similar) in 270 aa overlap (77-334:68-335)
50 60 70 80 90 100
pF1KB3 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
:: ..::::.::::::.: ::::::.:..
CCDS80 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
40 50 60 70 80 90
110 120 130 140 150 160
pF1KB3 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
CCDS80 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
100 110 120 130 140 150
170 180 190 200 210
pF1KB3 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
CCDS80 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB3 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
CCDS80 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB3 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNE---GKKGF-TDPSVEI
.: . ::::: .:: .::::.:::::..:::::::::: . .: ..: .::..:.
CCDS80 RG-HLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
280 290 300 310 320 330
>>CCDS76417.1 B3GAT3 gene_id:26229|Hs108|chr11 (319 aa)
initn: 784 init1: 347 opt: 798 Z-score: 981.1 bits: 189.8 E(32554): 2.5e-48
Smith-Waterman score: 798; 55.5% identity (72.5% similar) in 247 aa overlap (77-315:68-312)
50 60 70 80 90 100
pF1KB3 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
:: ..::::.::::::.: ::::::.:..
CCDS76 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
40 50 60 70 80 90
110 120 130 140 150 160
pF1KB3 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
CCDS76 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
100 110 120 130 140 150
170 180 190 200 210
pF1KB3 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
CCDS76 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB3 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
CCDS76 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB3 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
.: . ::::: .:: .::::.:::::. :. : :
CCDS76 RG-HLESSLLSHLVDPKDLEPRAANCTRSLAVSPRLECSSAILA
280 290 300 310
>>CCDS76418.1 B3GAT3 gene_id:26229|Hs108|chr11 (315 aa)
initn: 782 init1: 347 opt: 789 Z-score: 970.1 bits: 187.8 E(32554): 1e-47
Smith-Waterman score: 789; 56.3% identity (73.5% similar) in 238 aa overlap (77-306:68-303)
50 60 70 80 90 100
pF1KB3 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
:: ..::::.::::::.: ::::::.:..
CCDS76 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
40 50 60 70 80 90
110 120 130 140 150 160
pF1KB3 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
CCDS76 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
100 110 120 130 140 150
170 180 190 200 210
pF1KB3 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
CCDS76 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB3 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
CCDS76 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB3 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI
.: . ::::: .:: .::::.:::::.
CCDS76 RG-HLESSLLSHLVDPKDLEPRAANCTRTESRCVTQAGVQ
280 290 300 310
334 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:25:51 2016 done: Sat Nov 5 05:25:51 2016
Total Scan time: 2.770 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]