Result of FASTA (omim) for
pF1KB3848
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3848, 134 aa
1>>>pF1KB3848 134 - 134 aa - 134 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7943+/-0.000292; mu= -3.6610+/- 0.018
mean_var=213.2394+/-41.804, 0's: 0 Z-trim(124.1): 9 B-trim: 0 in 0/59
Lambda= 0.087830
statistics sampled from 44996 (45005) to 44996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.528), width: 16
Scan time: 5.690
The best scores are: opt bits E(85289)
XP_016864453 (OMIM: 605033) PREDICTED: complexin-2 ( 134) 880 122.4 2.2e-28
XP_005265856 (OMIM: 605033) PREDICTED: complexin-2 ( 134) 880 122.4 2.2e-28
XP_005265855 (OMIM: 605033) PREDICTED: complexin-2 ( 134) 880 122.4 2.2e-28
NP_006641 (OMIM: 605033) complexin-2 [Homo sapiens ( 134) 880 122.4 2.2e-28
NP_001008221 (OMIM: 605033) complexin-2 [Homo sapi ( 134) 880 122.4 2.2e-28
XP_011532721 (OMIM: 605033) PREDICTED: complexin-2 ( 134) 880 122.4 2.2e-28
NP_006642 (OMIM: 194190,605032) complexin-1 [Homo ( 134) 744 105.2 3.4e-23
XP_011511693 (OMIM: 194190,605032) PREDICTED: comp ( 119) 652 93.5 9.9e-20
>>XP_016864453 (OMIM: 605033) PREDICTED: complexin-2 iso (134 aa)
initn: 880 init1: 880 opt: 880 Z-score: 630.6 bits: 122.4 E(85289): 2.2e-28
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
70 80 90 100 110 120
130
pF1KB3 LKYLPGPLQDMFKK
::::::::::::::
XP_016 LKYLPGPLQDMFKK
130
>>XP_005265856 (OMIM: 605033) PREDICTED: complexin-2 iso (134 aa)
initn: 880 init1: 880 opt: 880 Z-score: 630.6 bits: 122.4 E(85289): 2.2e-28
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
70 80 90 100 110 120
130
pF1KB3 LKYLPGPLQDMFKK
::::::::::::::
XP_005 LKYLPGPLQDMFKK
130
>>XP_005265855 (OMIM: 605033) PREDICTED: complexin-2 iso (134 aa)
initn: 880 init1: 880 opt: 880 Z-score: 630.6 bits: 122.4 E(85289): 2.2e-28
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
70 80 90 100 110 120
130
pF1KB3 LKYLPGPLQDMFKK
::::::::::::::
XP_005 LKYLPGPLQDMFKK
130
>>NP_006641 (OMIM: 605033) complexin-2 [Homo sapiens] (134 aa)
initn: 880 init1: 880 opt: 880 Z-score: 630.6 bits: 122.4 E(85289): 2.2e-28
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
70 80 90 100 110 120
130
pF1KB3 LKYLPGPLQDMFKK
::::::::::::::
NP_006 LKYLPGPLQDMFKK
130
>>NP_001008221 (OMIM: 605033) complexin-2 [Homo sapiens] (134 aa)
initn: 880 init1: 880 opt: 880 Z-score: 630.6 bits: 122.4 E(85289): 2.2e-28
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
70 80 90 100 110 120
130
pF1KB3 LKYLPGPLQDMFKK
::::::::::::::
NP_001 LKYLPGPLQDMFKK
130
>>XP_011532721 (OMIM: 605033) PREDICTED: complexin-2 iso (134 aa)
initn: 880 init1: 880 opt: 880 Z-score: 630.6 bits: 122.4 E(85289): 2.2e-28
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
70 80 90 100 110 120
130
pF1KB3 LKYLPGPLQDMFKK
::::::::::::::
XP_011 LKYLPGPLQDMFKK
130
>>NP_006642 (OMIM: 194190,605032) complexin-1 [Homo sapi (134 aa)
initn: 744 init1: 744 opt: 744 Z-score: 537.5 bits: 105.2 E(85289): 3.4e-23
Smith-Waterman score: 744; 84.3% identity (92.5% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
:.::::::::::::::::::::.::::::: :::::::::::: :::::::.:.::::::
NP_006 MEFVMKQALGGATKDMGKMLGGDEEKDPDAAKKEEERQEALRQAEEERKAKYAKMEAERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
::: ::::::.:::::.::: .::.: :::::::::::: ::::: :::.:::::::
NP_006 AVRQGIRDKYGIKKKEEREAEAQAAMEANSEGSLTRPKKAIPPGCGDEVEEEDESILDTV
70 80 90 100 110 120
130
pF1KB3 LKYLPGPLQDMFKK
.::::::::::.::
NP_006 IKYLPGPLQDMLKK
130
>>XP_011511693 (OMIM: 194190,605032) PREDICTED: complexi (119 aa)
initn: 652 init1: 652 opt: 652 Z-score: 475.2 bits: 93.5 E(85289): 9.9e-20
Smith-Waterman score: 652; 83.2% identity (91.6% similar) in 119 aa overlap (16-134:1-119)
10 20 30 40 50 60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
:::::::.::::::: :::::::::::: :::::::.:.::::::
XP_011 MGKMLGGDEEKDPDAAKKEEERQEALRQAEEERKAKYAKMEAERE
10 20 30 40
70 80 90 100 110 120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
::: ::::::.:::::.::: .::.: :::::::::::: ::::: :::.:::::::
XP_011 AVRQGIRDKYGIKKKEEREAEAQAAMEANSEGSLTRPKKAIPPGCGDEVEEEDESILDTV
50 60 70 80 90 100
130
pF1KB3 LKYLPGPLQDMFKK
.::::::::::.::
XP_011 IKYLPGPLQDMLKK
110
134 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:25:15 2016 done: Sat Nov 5 05:25:16 2016
Total Scan time: 5.690 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]