FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3821, 423 aa
  1>>>pF1KB3821 423 - 423 aa - 423 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6148+/-0.000858; mu= 15.5896+/- 0.052
 mean_var=64.7573+/-12.924, 0's: 0 Z-trim(106.6): 9  B-trim: 166 in 1/49
 Lambda= 0.159379
 statistics sampled from 9067 (9069) to 9067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.279), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS11964.1 FECH gene_id:2235|Hs108|chr18          ( 423) 2871 668.9 2.6e-192
CCDS32836.1 FECH gene_id:2235|Hs108|chr18          ( 429) 2849 663.8 8.7e-191


>>CCDS11964.1 FECH gene_id:2235|Hs108|chr18               (423 aa)
 initn: 2871 init1: 2871 opt: 2871  Z-score: 3566.1  bits: 668.9 E(32554): 2.6e-192
Smith-Waterman score: 2871; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)

               10        20        30        40        50        60
pF1KB3 MRSLGANMAAALRAAGVLLRDPLASSSWRVCQPWRWKSGAAAAAVTTETAQHAQGAKPQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRSLGANMAAALRAAGVLLRDPLASSSWRVCQPWRWKSGAAAAAVTTETAQHAQGAKPQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QPQKRKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QPQKRKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 EQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 ILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 WQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKEC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 GVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTS
              370       380       390       400       410       420

          
pF1KB3 QQL
       :::
CCDS11 QQL
          

>>CCDS32836.1 FECH gene_id:2235|Hs108|chr18               (429 aa)
 initn: 2441 init1: 2441 opt: 2849  Z-score: 3538.7  bits: 663.8 E(32554): 8.7e-191
Smith-Waterman score: 2849; 98.6% identity (98.6% similar) in 429 aa overlap (1-423:1-429)

               10        20        30        40        50        60
pF1KB3 MRSLGANMAAALRAAGVLLRDPLASSSWRVCQPWRWKSGAAAAAVTTETAQHAQGAKPQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRSLGANMAAALRAAGVLLRDPLASSSWRVCQPWRWKSGAAAAAVTTETAQHAQGAKPQV
               10        20        30        40        50        60

                     70        80        90       100       110    
pF1KB3 QPQKR------KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKR
       :::::      :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QPQKRYESNIRKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKR
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB3 RTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAI
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KB3 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI
              190       200       210       220       230       240

          240       250       260       270       280       290    
pF1KB3 QCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYC
              250       260       270       280       290       300

          300       310       320       330       340       350    
pF1KB3 NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQ
              310       320       330       340       350       360

          360       370       380       390       400       410    
pF1KB3 VLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRET
              370       380       390       400       410       420

          420   
pF1KB3 KSFFTSQQL
       :::::::::
CCDS32 KSFFTSQQL
                




423 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:24:39 2016 done: Sat Nov  5 05:24:40 2016
 Total Scan time:  2.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]