FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3799, 485 aa
  1>>>pF1KB3799 485 - 485 aa - 485 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6123+/-0.000994; mu= 11.3833+/- 0.059
 mean_var=107.8434+/-21.946, 0's: 0 Z-trim(107.0): 88  B-trim: 0 in 0/52
 Lambda= 0.123503
 statistics sampled from 9225 (9308) to 9225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.286), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(32554)
CCDS14302.1 WDR13 gene_id:64743|Hs108|chrX         ( 485) 3242 588.8 4.3e-168


>>CCDS14302.1 WDR13 gene_id:64743|Hs108|chrX              (485 aa)
 initn: 3242 init1: 3242 opt: 3242  Z-score: 3131.3  bits: 588.8 E(32554): 4.3e-168
Smith-Waterman score: 3242; 100.0% identity (100.0% similar) in 485 aa overlap (1-485:1-485)

               10        20        30        40        50        60
pF1KB3 MAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 AQMNRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AQMNRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 ANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 MRIWASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MRIWASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SKLTGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SKLTGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISAR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 SWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 GACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVW
              430       440       450       460       470       480

            
pF1KB3 RREQK
       :::::
CCDS14 RREQK
            




485 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:23:26 2016 done: Sat Nov  5 05:23:27 2016
 Total Scan time:  2.980 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]