FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3738, 357 aa
  1>>>pF1KB3738 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3125+/-0.000843; mu= 16.1267+/- 0.050
 mean_var=65.9812+/-13.310, 0's: 0 Z-trim(106.6): 35  B-trim: 0 in 0/50
 Lambda= 0.157893
 statistics sampled from 9055 (9082) to 9055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.279), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS10116.1 SORD gene_id:6652|Hs108|chr15          ( 357) 2390 553.3 1.2e-157


>>CCDS10116.1 SORD gene_id:6652|Hs108|chr15               (357 aa)
 initn: 2390 init1: 2390 opt: 2390  Z-score: 2944.0  bits: 553.3 E(32554): 1.2e-157
Smith-Waterman score: 2390; 99.7% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KB3 MAAAAKPNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAAAKPNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 IVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 ATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 GCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRY
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS10 GCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAIREVDIKGVFRY
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KB3 CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCDPSDQNP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCDPSDQNP
              310       320       330       340       350       




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:21:06 2016 done: Sat Nov  5 05:21:07 2016
 Total Scan time:  2.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]