Result of FASTA (ccds) for
pF1KB3720
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3720, 324 aa
1>>>pF1KB3720 324 - 324 aa - 324 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0567+/-0.000747; mu= 17.5531+/- 0.045
mean_var=65.8148+/-13.306, 0's: 0 Z-trim(109.2): 15 B-trim: 451 in 1/51
Lambda= 0.158093
statistics sampled from 10705 (10714) to 10705 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.329), width: 16
Scan time: 2.470
The best scores are: opt bits E(32554)
CCDS43046.1 OGG1 gene_id:4968|Hs108|chr3 ( 324) 2263 524.6 4.1e-149
CCDS2580.1 OGG1 gene_id:4968|Hs108|chr3 ( 410) 2206 511.7 4.1e-145
CCDS2581.1 OGG1 gene_id:4968|Hs108|chr3 ( 345) 2203 510.9 5.7e-145
CCDS2579.1 OGG1 gene_id:4968|Hs108|chr3 ( 356) 2199 510.0 1.1e-144
CCDS46742.1 OGG1 gene_id:4968|Hs108|chr3 ( 322) 2198 509.8 1.2e-144
CCDS2576.1 OGG1 gene_id:4968|Hs108|chr3 ( 424) 2198 509.8 1.5e-144
CCDS2577.1 OGG1 gene_id:4968|Hs108|chr3 ( 357) 1700 396.2 2e-110
CCDS2578.1 OGG1 gene_id:4968|Hs108|chr3 ( 195) 1319 309.1 1.8e-84
>>CCDS43046.1 OGG1 gene_id:4968|Hs108|chr3 (324 aa)
initn: 2263 init1: 2263 opt: 2263 Z-score: 2790.5 bits: 524.6 E(32554): 4.1e-149
Smith-Waterman score: 2263; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)
10 20 30 40 50 60
pF1KB3 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
250 260 270 280 290 300
310 320
pF1KB3 NFFRSLWGPYAGWAQAVSVPRCPP
::::::::::::::::::::::::
CCDS43 NFFRSLWGPYAGWAQAVSVPRCPP
310 320
>>CCDS2580.1 OGG1 gene_id:4968|Hs108|chr3 (410 aa)
initn: 2198 init1: 2198 opt: 2206 Z-score: 2718.7 bits: 511.7 E(32554): 4.1e-145
Smith-Waterman score: 2206; 97.3% identity (97.6% similar) in 329 aa overlap (1-322:1-329)
10 20 30 40 50 60
pF1KB3 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
250 260 270 280 290 300
310 320
pF1KB3 NFFRSLWGPYAGWAQAV-------SVPRCPP
::::::::::::::::. ::: :
CCDS25 NFFRSLWGPYAGWAQATPPSYRCCSVPTCANPAMLRSHQQSAERVPKGRKARWGTLDKEI
310 320 330 340 350 360
>>CCDS2581.1 OGG1 gene_id:4968|Hs108|chr3 (345 aa)
initn: 2203 init1: 2203 opt: 2203 Z-score: 2716.1 bits: 510.9 E(32554): 5.7e-145
Smith-Waterman score: 2203; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB3 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
250 260 270 280 290 300
310 320
pF1KB3 NFFRSLWGPYAGWAQAVSVPRCPP
:::::::::::::::::
CCDS25 NFFRSLWGPYAGWAQAVLFSADLRQSRHAQEPPAKRRKGSKGPEG
310 320 330 340
>>CCDS2579.1 OGG1 gene_id:4968|Hs108|chr3 (356 aa)
initn: 2199 init1: 2199 opt: 2199 Z-score: 2711.0 bits: 510.0 E(32554): 1.1e-144
Smith-Waterman score: 2199; 99.7% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB3 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
250 260 270 280 290 300
310 320
pF1KB3 NFFRSLWGPYAGWAQAVSVPRCPP
::::::::::::::::.
CCDS25 NFFRSLWGPYAGWAQALCQVITTFMTFLGPHRLDQMPPEELQTSSSRLGGPPWQCI
310 320 330 340 350
>>CCDS46742.1 OGG1 gene_id:4968|Hs108|chr3 (322 aa)
initn: 2198 init1: 2198 opt: 2198 Z-score: 2710.4 bits: 509.8 E(32554): 1.2e-144
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KB3 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
250 260 270 280 290 300
310 320
pF1KB3 NFFRSLWGPYAGWAQAVSVPRCPP
::::::::::::::::
CCDS46 NFFRSLWGPYAGWAQAAGSDAS
310 320
>>CCDS2576.1 OGG1 gene_id:4968|Hs108|chr3 (424 aa)
initn: 2198 init1: 2198 opt: 2198 Z-score: 2708.7 bits: 509.8 E(32554): 1.5e-144
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KB3 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
250 260 270 280 290 300
310 320
pF1KB3 NFFRSLWGPYAGWAQAVSVPRCPP
::::::::::::::::
CCDS25 NFFRSLWGPYAGWAQAGLLGNAFDGHQLLRPLIFCQDHLREGPPIGRGDSQGEELEPQLP
310 320 330 340 350 360
>>CCDS2577.1 OGG1 gene_id:4968|Hs108|chr3 (357 aa)
initn: 1700 init1: 1700 opt: 1700 Z-score: 2095.9 bits: 396.2 E(32554): 2e-110
Smith-Waterman score: 1700; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KB3 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 CILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELG
:::::::::
CCDS25 CILPGVGTKGLLGNAFDGHQLLRPLIFCQDHLREGPPIGRGDSQGEELEPQLPSSLSSIP
250 260 270 280 290 300
>>CCDS2578.1 OGG1 gene_id:4968|Hs108|chr3 (195 aa)
initn: 1319 init1: 1319 opt: 1319 Z-score: 1630.0 bits: 309.1 E(32554): 1.8e-84
Smith-Waterman score: 1319; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KB3 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKAL
::::::::::
CCDS25 FPSLQALAGPPWQCI
190
324 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:48:36 2016 done: Thu Nov 3 13:48:36 2016
Total Scan time: 2.470 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]