Result of FASTA (omim) for
pF1KB3650
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3650, 478 aa
1>>>pF1KB3650 478 - 478 aa - 478 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4116+/-0.000319; mu= 14.5473+/- 0.020
mean_var=123.7156+/-24.725, 0's: 0 Z-trim(119.0): 59 B-trim: 59 in 1/60
Lambda= 0.115309
statistics sampled from 32426 (32486) to 32426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.381), width: 16
Scan time: 9.000
The best scores are: opt bits E(85289)
NP_000629 (OMIM: 193190) vitronectin precursor [Ho ( 478) 3399 576.5 5.7e-164
XP_016855492 (OMIM: 208250,604283) PREDICTED: prot (1270) 446 85.6 8.9e-16
NP_001121182 (OMIM: 208250,604283) proteoglycan 4 (1270) 446 85.6 8.9e-16
XP_016855491 (OMIM: 208250,604283) PREDICTED: prot (1311) 446 85.6 9.1e-16
NP_001121181 (OMIM: 208250,604283) proteoglycan 4 (1311) 446 85.6 9.1e-16
NP_001290161 (OMIM: 208250,604283) proteoglycan 4 (1361) 446 85.6 9.4e-16
NP_001121180 (OMIM: 208250,604283) proteoglycan 4 (1363) 446 85.6 9.4e-16
NP_005798 (OMIM: 208250,604283) proteoglycan 4 iso (1404) 446 85.6 9.6e-16
NP_005932 (OMIM: 602262) matrix metalloproteinase- ( 607) 311 62.9 3e-09
NP_004986 (OMIM: 277950,600754) matrix metalloprot ( 582) 304 61.7 6.5e-09
NP_002419 (OMIM: 602261) matrix metalloproteinase- ( 669) 293 59.9 2.5e-08
XP_011536658 (OMIM: 602285) PREDICTED: matrix meta ( 519) 281 57.8 8.4e-08
XP_011536657 (OMIM: 602285) PREDICTED: matrix meta ( 519) 281 57.8 8.4e-08
XP_011536659 (OMIM: 602285) PREDICTED: matrix meta ( 519) 281 57.8 8.4e-08
NP_057239 (OMIM: 602285) matrix metalloproteinase- ( 603) 281 57.9 9.4e-08
NP_002418 (OMIM: 250400,600108,602111) collagenase ( 471) 227 48.8 4e-05
NP_002413 (OMIM: 185250,614466) stromelysin-1 prep ( 477) 223 48.1 6.3e-05
NP_000604 (OMIM: 142290) hemopexin precursor [Homo ( 462) 222 47.9 7e-05
NP_005931 (OMIM: 185261) stromelysin-3 preproprote ( 488) 210 46.0 0.00029
XP_016873260 (OMIM: 120355) PREDICTED: neutrophil ( 444) 201 44.4 0.00076
NP_001291371 (OMIM: 120355) neutrophil collagenase ( 444) 201 44.4 0.00076
XP_011541137 (OMIM: 120355) PREDICTED: neutrophil ( 444) 201 44.4 0.00076
NP_001291370 (OMIM: 120355) neutrophil collagenase ( 444) 201 44.4 0.00076
NP_002415 (OMIM: 120355) neutrophil collagenase is ( 467) 201 44.5 0.00079
XP_011541136 (OMIM: 120355) PREDICTED: neutrophil ( 476) 201 44.5 0.0008
XP_006719464 (OMIM: 601807,611543) PREDICTED: matr ( 279) 195 43.3 0.0011
NP_002417 (OMIM: 601046) macrophage metalloelastas ( 470) 196 43.6 0.0014
XP_011536661 (OMIM: 601807,611543) PREDICTED: matr ( 426) 195 43.4 0.0015
NP_002420 (OMIM: 601807,611543) matrix metalloprot ( 508) 195 43.5 0.0017
XP_011520907 (OMIM: 608482) PREDICTED: matrix meta ( 352) 189 42.4 0.0026
NP_001139410 (OMIM: 120353,226600,606963) intersti ( 403) 189 42.4 0.0028
NP_002412 (OMIM: 120353,226600,606963) interstitia ( 469) 189 42.5 0.0032
XP_011520906 (OMIM: 608482) PREDICTED: matrix meta ( 478) 189 42.5 0.0032
XP_011520904 (OMIM: 608482) PREDICTED: matrix meta ( 528) 189 42.5 0.0034
NP_071913 (OMIM: 608482) matrix metalloproteinase- ( 562) 189 42.5 0.0036
NP_001165910 (OMIM: 606720) poly(U)-specific endor ( 410) 185 41.7 0.0045
NP_002416 (OMIM: 185260) stromelysin-2 preproprote ( 476) 182 41.3 0.0072
>>NP_000629 (OMIM: 193190) vitronectin precursor [Homo s (478 aa)
initn: 3399 init1: 3399 opt: 3399 Z-score: 3064.8 bits: 576.5 E(85289): 5.7e-164
Smith-Waterman score: 3399; 100.0% identity (100.0% similar) in 478 aa overlap (1-478:1-478)
10 20 30 40 50 60
pF1KB3 MAPLRPLLILALLAWVALADQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPLRPLLILALLAWVALADQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QVTRGDVFTMPEDEYTVYDDGEEKNNATVHEQVGGPSLTSDLQAQSKGNPEQTPVLKPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QVTRGDVFTMPEDEYTVYDDGEEKNNATVHEQVGGPSLTSDLQAQSKGNPEQTPVLKPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 EAPAPEVGASKPEGIDSRPETLHPGRPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EAPAPEVGASKPEGIDSRPETLHPGRPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YELDEKAVRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YELDEKAVRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RNISDGFDGIPDNVDAALALPAHSYSGRERVYFFKGKQYWEYQFQHQPSQEECEGSSLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RNISDGFDGIPDNVDAALALPAHSYSGRERVYFFKGKQYWEYQFQHQPSQEECEGSSLSA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 VFEHFAMMQRDSWEDIFELLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VFEHFAMMQRDSWEDIFELLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 PRPSLAKKQRFRHRNRKGYRSQRGHSRGRNQNSRRPSRATWLSLFSSEESNLGANNYDDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PRPSLAKKQRFRHRNRKGYRSQRGHSRGRNQNSRRPSRATWLSLFSSEESNLGANNYDDY
370 380 390 400 410 420
430 440 450 460 470
pF1KB3 RMDWLVPATCEPIQSVFFFSGDKYYRVNLRTRRVDTVDPPYPRSIAQYWLGCPAPGHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RMDWLVPATCEPIQSVFFFSGDKYYRVNLRTRRVDTVDPPYPRSIAQYWLGCPAPGHL
430 440 450 460 470
>>XP_016855492 (OMIM: 208250,604283) PREDICTED: proteogl (1270 aa)
initn: 654 init1: 293 opt: 446 Z-score: 404.2 bits: 85.6 E(85289): 8.9e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:911-1149)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
XP_016 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
890 900 910 920 930 940
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
XP_016 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
950 960 970 980 990
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
XP_016 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1000 1010 1020 1030 1040 1050
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
XP_016 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1060 1070 1080 1090 1100 1110
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
XP_016 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1120 1130 1140 1150 1160 1170
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
XP_016 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1180 1190 1200 1210 1220 1230
>>NP_001121182 (OMIM: 208250,604283) proteoglycan 4 isof (1270 aa)
initn: 654 init1: 293 opt: 446 Z-score: 404.2 bits: 85.6 E(85289): 8.9e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:911-1149)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
NP_001 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
890 900 910 920 930 940
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
NP_001 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
950 960 970 980 990
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
NP_001 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1000 1010 1020 1030 1040 1050
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
NP_001 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1060 1070 1080 1090 1100 1110
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
NP_001 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1120 1130 1140 1150 1160 1170
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
NP_001 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1180 1190 1200 1210 1220 1230
>>XP_016855491 (OMIM: 208250,604283) PREDICTED: proteogl (1311 aa)
initn: 579 init1: 293 opt: 446 Z-score: 404.0 bits: 85.6 E(85289): 9.1e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:952-1190)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
XP_016 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
930 940 950 960 970 980
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
XP_016 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
990 1000 1010 1020 1030
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
XP_016 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1040 1050 1060 1070 1080 1090
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
XP_016 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1100 1110 1120 1130 1140 1150
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
XP_016 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1160 1170 1180 1190 1200 1210
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
XP_016 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1220 1230 1240 1250 1260 1270
>>NP_001121181 (OMIM: 208250,604283) proteoglycan 4 isof (1311 aa)
initn: 579 init1: 293 opt: 446 Z-score: 404.0 bits: 85.6 E(85289): 9.1e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:952-1190)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
NP_001 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
930 940 950 960 970 980
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
NP_001 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
990 1000 1010 1020 1030
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
NP_001 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1040 1050 1060 1070 1080 1090
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
NP_001 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1100 1110 1120 1130 1140 1150
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
NP_001 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1160 1170 1180 1190 1200 1210
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
NP_001 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1220 1230 1240 1250 1260 1270
>>NP_001290161 (OMIM: 208250,604283) proteoglycan 4 isof (1361 aa)
initn: 730 init1: 293 opt: 446 Z-score: 403.8 bits: 85.6 E(85289): 9.4e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:1002-1240)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
NP_001 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
980 990 1000 1010 1020 1030
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
NP_001 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
1040 1050 1060 1070 1080
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
NP_001 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1090 1100 1110 1120 1130 1140
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
NP_001 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1150 1160 1170 1180 1190 1200
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
NP_001 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1210 1220 1230 1240 1250 1260
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
NP_001 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1270 1280 1290 1300 1310 1320
>>NP_001121180 (OMIM: 208250,604283) proteoglycan 4 isof (1363 aa)
initn: 654 init1: 293 opt: 446 Z-score: 403.8 bits: 85.6 E(85289): 9.4e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:1004-1242)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
NP_001 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
980 990 1000 1010 1020 1030
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
NP_001 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
1040 1050 1060 1070 1080
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
NP_001 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1090 1100 1110 1120 1130 1140
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
NP_001 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1150 1160 1170 1180 1190 1200
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
NP_001 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1210 1220 1230 1240 1250 1260
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
NP_001 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1270 1280 1290 1300 1310 1320
>>NP_005798 (OMIM: 208250,604283) proteoglycan 4 isoform (1404 aa)
initn: 730 init1: 293 opt: 446 Z-score: 403.7 bits: 85.6 E(85289): 9.6e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:1045-1283)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
NP_005 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
1020 1030 1040 1050 1060 1070
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
NP_005 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
1080 1090 1100 1110 1120 1130
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
NP_005 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1140 1150 1160 1170 1180
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
NP_005 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1190 1200 1210 1220 1230 1240
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
NP_005 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1250 1260 1270 1280 1290 1300
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
NP_005 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1310 1320 1330 1340 1350 1360
>>NP_005932 (OMIM: 602262) matrix metalloproteinase-16 p (607 aa)
initn: 285 init1: 119 opt: 311 Z-score: 287.1 bits: 62.9 E(85289): 3e-09
Smith-Waterman score: 311; 32.5% identity (61.8% similar) in 191 aa overlap (101-282:282-462)
80 90 100 110 120
pF1KB3 PEDEYTVYDDGEEKNNATVHEQVGGPSLTSDLQAQSK--GNPEQTPV-LKPEEEAPAPE-
:::. .: : :.. : .: .: .
NP_005 LGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYGPPDKIPPPTRPLPTVPPHRS
260 270 280 290 300 310
130 140 150 160 170 180
pF1KB3 VGASKPEGIDSRPETLHP--GRPQ-PPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYEL
. . :. : ::. .: :::. : :. ..:.:. :.... :. .:.:. :. ...
NP_005 IPPADPRKND-RPKPPRPPTGRPSYPGAKPNICDGN-FNTLAILRR-EMFVFKDQWFWRV
320 330 340 350 360
190 200 210 220 230 240
pF1KB3 DEKAVRPGYPKLIRDVW-GIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRN
.. : ::: : : :. :::.. : .:. .:::..:: :.: .:.: ::..
NP_005 RNNRVMDGYPMQITYFWRGLPPSIDAVYE--NSDGNFVFFKGNKYWVFKDTTLQPGYPHD
370 380 390 400 410 420
250 260 270 280 290 300
pF1KB3 ISDGFDGIPDN-VDAALALPAHSYSGRERVYFFKGKQYWEYQFQHQPSQEECEGSSLSAV
. .::: . .:.:. . ..::::: .::.:
NP_005 LITLGSGIPPHGIDSAIW-----WEDVGKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWK
430 440 450 460 470 480
310 320 330 340 350 360
pF1KB3 FEHFAMMQRDSWEDIFELLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAP
NP_005 GIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILKVEPGYPRSILKDFMGCDGPTDRVKE
490 500 510 520 530 540
>>NP_004986 (OMIM: 277950,600754) matrix metalloproteina (582 aa)
initn: 263 init1: 105 opt: 304 Z-score: 281.1 bits: 61.7 E(85289): 6.5e-09
Smith-Waterman score: 304; 28.5% identity (58.2% similar) in 239 aa overlap (121-343:286-509)
100 110 120 130 140 150
pF1KB3 EQVGGPSLTSDLQAQSKGNPEQTPVLKPEEEAPAPEVGASKPEGIDSRPETLHPGRPQPP
:. : .:. ::: . : .:. :
NP_004 IMAPFYQWMDTENFVLPDDDRRGIQQLYGGESGFPTKMPPQPR-TTSRPSV--PDKPKNP
260 270 280 290 300 310
160 170 180 190 200
pF1KB3 AE-EELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYPKLIRDVW-GIEGPIDA
. ..:.:. ::. . :. : .:.:. .. ... .. : ::: : . : :. . :..
NP_004 TYGPNICDGN-FDTVAMLR-GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINT
320 330 340 350 360 370
210 220 230 240 250 260
pF1KB3 AFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIP-DNVDAALA-LPAHSYS
:. : . :: .:::...: :... :.: ::..:.. :.: :..:::: .: .
NP_004 AYERKD--GKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMP----N
380 390 400 410 420
270 280 290 300 310 320
pF1KB3 GRERVYFFKGKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSW---EDIFELLF--
: ..:::.:..: :.:... . : . :.: . : :. ...: ..
NP_004 G--KTYFFRGNKY--YRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKG
430 440 450 460 470 480
330 340 350 360 370
pF1KB3 ---WGRTSAGTR----QPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHR
: .. . :. ::: : :
NP_004 NKYWKFNNQKLKVEPGYPKSALRDWMGCPSGGRPDEGTEEETEVIIIEVDEEGGGAVSAA
490 500 510 520 530 540
478 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:17:15 2016 done: Sat Nov 5 05:17:16 2016
Total Scan time: 9.000 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]